t2-web 0.0.6 → 0.0.7
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- data/CHANGES +7 -0
- data/README +2 -2
- data/Rakefile +2 -2
- data/doc/rdoc/CHANGES.html +127 -0
- data/doc/rdoc/LICENSE.html +111 -0
- data/doc/rdoc/README.html +141 -0
- data/doc/rdoc/created.rid +4 -0
- data/doc/rdoc/images/brick.png +0 -0
- data/doc/rdoc/images/brick_link.png +0 -0
- data/doc/rdoc/images/bug.png +0 -0
- data/doc/rdoc/images/bullet_black.png +0 -0
- data/doc/rdoc/images/bullet_toggle_minus.png +0 -0
- data/doc/rdoc/images/bullet_toggle_plus.png +0 -0
- data/doc/rdoc/images/date.png +0 -0
- data/doc/rdoc/images/find.png +0 -0
- data/doc/rdoc/images/loadingAnimation.gif +0 -0
- data/doc/rdoc/images/macFFBgHack.png +0 -0
- data/doc/rdoc/images/package.png +0 -0
- data/doc/rdoc/images/page_green.png +0 -0
- data/doc/rdoc/images/page_white_text.png +0 -0
- data/doc/rdoc/images/page_white_width.png +0 -0
- data/doc/rdoc/images/plugin.png +0 -0
- data/doc/rdoc/images/ruby.png +0 -0
- data/doc/rdoc/images/tag_green.png +0 -0
- data/doc/rdoc/images/wrench.png +0 -0
- data/doc/rdoc/images/wrench_orange.png +0 -0
- data/doc/rdoc/images/zoom.png +0 -0
- data/doc/rdoc/index.html +114 -0
- data/doc/rdoc/js/darkfish.js +116 -0
- data/doc/rdoc/js/jquery.js +32 -0
- data/doc/rdoc/js/quicksearch.js +114 -0
- data/doc/rdoc/js/thickbox-compressed.js +10 -0
- data/doc/rdoc/rdoc.css +763 -0
- metadata +38 -8
data/CHANGES
CHANGED
data/README
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Authors:: Konstantinos Karasavvas
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Gem Version:: 0.0.
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Gem Version:: 0.0.7
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Contact:: mailto:kostas.karasavvas@nbic.nl
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Licence:: MIT (See LICENCE or http://www.opensource.org/licenses/mit-license)
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Copyright:: (c)
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Copyright:: (c) 2012 Netherlands Bioinformatics Centre, The Netherlands
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== Synopsis
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data/Rakefile
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spec = Gem::Specification.new do |s|
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s.name = 't2-web'
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s.version = '0.0.
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s.version = '0.0.7'
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s.extra_rdoc_files = ['README', 'LICENSE', 'CHANGES']
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s.summary = 'Web application that generates a Web UI form for a Taverna2 workflow, given its myExperiment id, for ease of execution. The only requirement for the user is a web browser.'
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s.description = s.summary
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s.files = %w(LICENSE README CHANGES Rakefile) + Dir.glob("{bin,lib,doc,spec,public,views}/**/*")
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s.require_path = "lib"
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s.bindir = "bin"
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s.add_dependency 'sinatra', '~> 1.
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s.add_dependency 'sinatra', '~> 1.3.0'
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s.add_dependency 'haml', '~> 3.1.2'
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s.add_dependency 'rest-client', '~> 1.6.3'
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s.add_dependency 't2-server', '~> 0.6.1'
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<?xml version="1.0" encoding="utf-8"?>
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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<head>
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<meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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<title>File: CHANGES [web-t2 Docs]</title>
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<link type="text/css" media="screen" href="./rdoc.css" rel="stylesheet" />
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<script src="./js/jquery.js" type="text/javascript"
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charset="utf-8"></script>
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<script src="./js/thickbox-compressed.js" type="text/javascript"
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charset="utf-8"></script>
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<script src="./js/quicksearch.js" type="text/javascript"
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charset="utf-8"></script>
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<script src="./js/darkfish.js" type="text/javascript"
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charset="utf-8"></script>
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</head>
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<body class="file">
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<div id="metadata">
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<div id="home-metadata">
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<div id="home-section" class="section">
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<h3 class="section-header">
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<a href="./index.html">Home</a>
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<a href="./index.html#classes">Classes</a>
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<a href="./index.html#methods">Methods</a>
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</h3>
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</div>
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</div>
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<div id="project-metadata">
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<div id="fileindex-section" class="section project-section">
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<h3 class="section-header">Files</h3>
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<ul>
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<li class="file"><a href="./CHANGES.html">CHANGES</a></li>
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<li class="file"><a href="./LICENSE.html">LICENSE</a></li>
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<li class="file"><a href="./README.html">README</a></li>
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</ul>
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</div>
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<div id="classindex-section" class="section project-section">
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<h3 class="section-header">Class Index
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<span class="search-toggle"><img src="./images/find.png"
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height="16" width="16" alt="[+]"
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title="show/hide quicksearch" /></span></h3>
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<form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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<fieldset>
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<legend>Quicksearch</legend>
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<input type="text" name="quicksearch" value=""
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class="quicksearch-field" />
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</fieldset>
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</form>
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<ul class="link-list">
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</ul>
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<div id="no-class-search-results" style="display: none;">No matching classes.</div>
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</div>
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</div>
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</div>
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<div id="documentation">
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<h1>Changes log for the Taverna via the Web Gem</h1>
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<h2>Version 0.0.7</h2>
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<ul><li>
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<p>Updated sinatra dependency</p>
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</li><li>
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<p>Updated copyright year</p>
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</li></ul>
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<h2>Version 0.0.6</h2>
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<ul><li>
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<p>Initial rdoc documentation</p>
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</li></ul>
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<h2>Version 0.0.5</h2>
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<ul><li>
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<p>Updated to new myexperiment-rest API</p>
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</li></ul>
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<h2>Version 0.0.4</h2>
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<ul><li>
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<p>Improved the UI (added logos, tooltips, changed colours).</p>
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</li><li>
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<p>Made some code abstractions</p>
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</li></ul>
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<h2>Version 0.0.3</h2>
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<ul><li>
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<p>Improved the UI (changed divs with frames).</p>
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</li></ul>
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<h2>Version 0.0.2</h2>
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<ul><li>
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<p>Added upload functionality option for each input.</p>
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</li></ul>
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<h2>Version 0.0.1</h2>
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<ul><li>
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<p>Works. Very basic functionality and UI.</p>
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</li></ul>
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</div>
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<div id="validator-badges">
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<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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<p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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Rdoc Generator</a> 2</small>.</p>
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</div>
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</body>
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</html>
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<?xml version="1.0" encoding="utf-8"?>
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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<head>
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<meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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<title>File: LICENSE [web-t2 Docs]</title>
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<link type="text/css" media="screen" href="./rdoc.css" rel="stylesheet" />
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<script src="./js/jquery.js" type="text/javascript"
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charset="utf-8"></script>
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<script src="./js/thickbox-compressed.js" type="text/javascript"
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charset="utf-8"></script>
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<script src="./js/quicksearch.js" type="text/javascript"
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charset="utf-8"></script>
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<script src="./js/darkfish.js" type="text/javascript"
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charset="utf-8"></script>
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</head>
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<body class="file">
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<div id="metadata">
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<div id="home-metadata">
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<div id="home-section" class="section">
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<h3 class="section-header">
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<a href="./index.html">Home</a>
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<a href="./index.html#classes">Classes</a>
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<a href="./index.html#methods">Methods</a>
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</h3>
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</div>
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</div>
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<div id="project-metadata">
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<div id="fileindex-section" class="section project-section">
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<h3 class="section-header">Files</h3>
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<ul>
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<li class="file"><a href="./CHANGES.html">CHANGES</a></li>
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<li class="file"><a href="./LICENSE.html">LICENSE</a></li>
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<li class="file"><a href="./README.html">README</a></li>
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</ul>
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</div>
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<div id="classindex-section" class="section project-section">
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<h3 class="section-header">Class Index
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<span class="search-toggle"><img src="./images/find.png"
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height="16" width="16" alt="[+]"
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title="show/hide quicksearch" /></span></h3>
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<form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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<fieldset>
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<legend>Quicksearch</legend>
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<input type="text" name="quicksearch" value=""
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class="quicksearch-field" />
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</fieldset>
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</form>
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<ul class="link-list">
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</ul>
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<div id="no-class-search-results" style="display: none;">No matching classes.</div>
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</div>
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</div>
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</div>
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<div id="documentation">
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<h2>t2-web </h2>
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<p>The MIT License</p>
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<p>Copyright © 2010 - Netherlands Bioinformatics Centre</p>
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<p>Permission is hereby granted, free of charge, to any person obtaining a
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copy of this software and associated documentation files (the
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“Software”), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to permit
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persons to whom the Software is furnished to do so, subject to the
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following conditions:</p>
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<p>The above copyright notice and this permission notice shall be included in
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all copies or substantial portions of the Software.</p>
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<p>THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS
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OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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DEALINGS IN THE SOFTWARE.</p>
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</div>
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<div id="validator-badges">
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<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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<p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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Rdoc Generator</a> 2</small>.</p>
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</div>
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</body>
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</html>
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<head>
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<meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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<title>File: README [web-t2 Docs]</title>
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<link type="text/css" media="screen" href="./rdoc.css" rel="stylesheet" />
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<script src="./js/jquery.js" type="text/javascript"
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<script src="./js/quicksearch.js" type="text/javascript"
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charset="utf-8"></script>
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<script src="./js/darkfish.js" type="text/javascript"
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charset="utf-8"></script>
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</head>
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<body class="file">
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<div id="metadata">
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<div id="home-section" class="section">
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<h3 class="section-header">
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<a href="./index.html">Home</a>
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<a href="./index.html#classes">Classes</a>
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<a href="./index.html#methods">Methods</a>
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</h3>
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<div id="fileindex-section" class="section project-section">
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<h3 class="section-header">Files</h3>
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<ul>
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<li class="file"><a href="./CHANGES.html">CHANGES</a></li>
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<li class="file"><a href="./LICENSE.html">LICENSE</a></li>
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<li class="file"><a href="./README.html">README</a></li>
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</ul>
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<div id="classindex-section" class="section project-section">
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<h3 class="section-header">Class Index
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<span class="search-toggle"><img src="./images/find.png"
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height="16" width="16" alt="[+]"
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title="show/hide quicksearch" /></span></h3>
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<form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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<fieldset>
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<legend>Quicksearch</legend>
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<input type="text" name="quicksearch" value=""
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class="quicksearch-field" />
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</fieldset>
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</form>
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<ul class="link-list">
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</ul>
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<div id="no-class-search-results" style="display: none;">No matching classes.</div>
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</div>
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</div>
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</div>
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<div id="documentation">
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<h1>t2-web interface generator</h1>
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<table class="rdoc-list"><tr><td class="rdoc-term"><p>Authors</p></td>
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<td>
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80
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<p>Konstantinos Karasavvas</p>
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81
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</td></tr><tr><td class="rdoc-term"><p>Gem Version</p></td>
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<td>
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83
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<p>0.0.7</p>
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84
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</td></tr><tr><td class="rdoc-term"><p>Contact</p></td>
|
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85
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<td>
|
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86
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<p><a href="mailto:kostas.karasavvas@nbic.nl">kostas.karasavvas@nbic.nl</a></p>
|
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</td></tr><tr><td class="rdoc-term"><p>Licence</p></td>
|
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88
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<td>
|
|
89
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<p>MIT (See LICENCE or <a
|
|
90
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+
href="http://www.opensource.org/licenses/mit-license">www.opensource.org/licenses/mit-license</a>)</p>
|
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91
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</td></tr><tr><td class="rdoc-term"><p>Copyright</p></td>
|
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<td>
|
|
93
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<p>© 2012 Netherlands Bioinformatics Centre, The Netherlands</p>
|
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</td></tr></table>
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95
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|
|
96
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<h2>Synopsis</h2>
|
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97
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+
|
|
98
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<p>This web application accepts a myExperiment workflow identifier and
|
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99
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+
constructs a web form to allow end-users to configure and execute that
|
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100
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+
workflow via a web browser with no other dependencies.. The web form
|
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101
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+
interface is as good as the description provided in the workflow itself in
|
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+
myExperiment.</p>
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+
|
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<h2>Installation</h2>
|
|
105
|
+
|
|
106
|
+
<pre>[sudo] gem install t2-web</pre>
|
|
107
|
+
|
|
108
|
+
<h2>Usage</h2>
|
|
109
|
+
|
|
110
|
+
<p>t2_webapp</p>
|
|
111
|
+
|
|
112
|
+
<p>Runs the web application at port 9494 and waits for incoming requests.</p>
|
|
113
|
+
|
|
114
|
+
<h2>References</h2>
|
|
115
|
+
<table class="rdoc-list"><tr><td class="rdoc-term"><p>Taverna to Web Form Generator</p></td>
|
|
116
|
+
<td>
|
|
117
|
+
<p><a
|
|
118
|
+
href="https://trac.nbic.nl/elabfactory/wiki/t2web">trac.nbic.nl/elabfactory/wiki/t2web</a></p>
|
|
119
|
+
</td></tr><tr><td class="rdoc-term"><p>Taverna2</p></td>
|
|
120
|
+
<td>
|
|
121
|
+
<p><a href="http://www.taverna.org.uk">www.taverna.org.uk</a></p>
|
|
122
|
+
</td></tr><tr><td class="rdoc-term"><p>myExperiment</p></td>
|
|
123
|
+
<td>
|
|
124
|
+
<p><a href="http://www.myexperiment.org">www.myexperiment.org</a></p>
|
|
125
|
+
</td></tr></table>
|
|
126
|
+
|
|
127
|
+
<h2>Semantic Versioning</h2>
|
|
128
|
+
|
|
129
|
+
<p>This module uses semantic versioning concepts from <a
|
|
130
|
+
href="http://semver.org/.">semver.org/.</a></p>
|
|
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|
+
|
|
132
|
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</div>
|
|
133
|
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|
|
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|
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<div id="validator-badges">
|
|
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|
+
<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
|
|
136
|
+
<p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
|
|
137
|
+
Rdoc Generator</a> 2</small>.</p>
|
|
138
|
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</div>
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</body>
|
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</html>
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