t2-web 0.0.6 → 0.0.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
data/CHANGES CHANGED
@@ -1,5 +1,12 @@
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  = Changes log for the Taverna via the Web Gem
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+ == Version 0.0.7
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+ * Updated sinatra dependency
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+ * Updated copyright year
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+
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+ == Version 0.0.6
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+ * Initial rdoc documentation
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+
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  == Version 0.0.5
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  * Updated to new myexperiment-rest API
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data/README CHANGED
@@ -2,10 +2,10 @@
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  Authors:: Konstantinos Karasavvas
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- Gem Version:: 0.0.6
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+ Gem Version:: 0.0.7
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  Contact:: mailto:kostas.karasavvas@nbic.nl
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  Licence:: MIT (See LICENCE or http://www.opensource.org/licenses/mit-license)
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- Copyright:: (c) 2010 Netherlands Bioinformatics Centre, The Netherlands
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+ Copyright:: (c) 2012 Netherlands Bioinformatics Centre, The Netherlands
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  == Synopsis
data/Rakefile CHANGED
@@ -12,7 +12,7 @@ require 'rdoc/task'
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  spec = Gem::Specification.new do |s|
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  s.name = 't2-web'
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- s.version = '0.0.6'
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+ s.version = '0.0.7'
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  s.extra_rdoc_files = ['README', 'LICENSE', 'CHANGES']
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  s.summary = 'Web application that generates a Web UI form for a Taverna2 workflow, given its myExperiment id, for ease of execution. The only requirement for the user is a web browser.'
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  s.description = s.summary
@@ -22,7 +22,7 @@ spec = Gem::Specification.new do |s|
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  s.files = %w(LICENSE README CHANGES Rakefile) + Dir.glob("{bin,lib,doc,spec,public,views}/**/*")
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  s.require_path = "lib"
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  s.bindir = "bin"
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- s.add_dependency 'sinatra', '~> 1.2.6'
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+ s.add_dependency 'sinatra', '~> 1.3.0'
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  s.add_dependency 'haml', '~> 3.1.2'
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  s.add_dependency 'rest-client', '~> 1.6.3'
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  s.add_dependency 't2-server', '~> 0.6.1'
@@ -0,0 +1,127 @@
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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+
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+ <title>File: CHANGES [web-t2 Docs]</title>
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+
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+ <link type="text/css" media="screen" href="./rdoc.css" rel="stylesheet" />
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+
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+ <script src="./js/jquery.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/thickbox-compressed.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/quicksearch.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/darkfish.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ </head>
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+
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+ <body class="file">
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+ <div id="metadata">
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+ <div id="home-metadata">
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+ <div id="home-section" class="section">
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+ <h3 class="section-header">
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+ <a href="./index.html">Home</a>
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+ <a href="./index.html#classes">Classes</a>
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+ <a href="./index.html#methods">Methods</a>
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+ </h3>
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+ </div>
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+ </div>
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+
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+ <div id="project-metadata">
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+
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+
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+ <div id="fileindex-section" class="section project-section">
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+ <h3 class="section-header">Files</h3>
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+ <ul>
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+
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+ <li class="file"><a href="./CHANGES.html">CHANGES</a></li>
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+
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+ <li class="file"><a href="./LICENSE.html">LICENSE</a></li>
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+
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+ <li class="file"><a href="./README.html">README</a></li>
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+
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+ </ul>
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+ </div>
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+
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+
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+ <div id="classindex-section" class="section project-section">
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+ <h3 class="section-header">Class Index
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+ <span class="search-toggle"><img src="./images/find.png"
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+ height="16" width="16" alt="[+]"
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+ title="show/hide quicksearch" /></span></h3>
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+ <form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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+ <fieldset>
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+ <legend>Quicksearch</legend>
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+ <input type="text" name="quicksearch" value=""
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+ class="quicksearch-field" />
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+ </fieldset>
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+ </form>
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+
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+ <ul class="link-list">
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+
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+ </ul>
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+ <div id="no-class-search-results" style="display: none;">No matching classes.</div>
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+ </div>
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+
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+
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+ </div>
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+ </div>
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+
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+ <div id="documentation">
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+
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+ <h1>Changes log for the Taverna via the Web Gem</h1>
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+
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+ <h2>Version 0.0.7</h2>
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+ <ul><li>
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+ <p>Updated sinatra dependency</p>
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+ </li><li>
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+ <p>Updated copyright year</p>
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+ </li></ul>
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+
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+ <h2>Version 0.0.6</h2>
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+ <ul><li>
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+ <p>Initial rdoc documentation</p>
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+ </li></ul>
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+
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+ <h2>Version 0.0.5</h2>
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+ <ul><li>
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+ <p>Updated to new myexperiment-rest API</p>
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+ </li></ul>
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+
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+ <h2>Version 0.0.4</h2>
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+ <ul><li>
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+ <p>Improved the UI (added logos, tooltips, changed colours).</p>
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+ </li><li>
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+ <p>Made some code abstractions</p>
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+ </li></ul>
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+
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+ <h2>Version 0.0.3</h2>
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+ <ul><li>
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+ <p>Improved the UI (changed divs with frames).</p>
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+ </li></ul>
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+
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+ <h2>Version 0.0.2</h2>
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+ <ul><li>
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+ <p>Added upload functionality option for each input.</p>
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+ </li></ul>
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+
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+ <h2>Version 0.0.1</h2>
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+ <ul><li>
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+ <p>Works. Very basic functionality and UI.</p>
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+ </li></ul>
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+
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+ </div>
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ <p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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+ Rdoc Generator</a> 2</small>.</p>
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+ </div>
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+ </body>
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+ </html>
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+
@@ -0,0 +1,111 @@
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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+
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+ <title>File: LICENSE [web-t2 Docs]</title>
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+
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+ <link type="text/css" media="screen" href="./rdoc.css" rel="stylesheet" />
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+
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+ <script src="./js/jquery.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/thickbox-compressed.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/quicksearch.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/darkfish.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ </head>
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+
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+ <body class="file">
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+ <div id="metadata">
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+ <div id="home-metadata">
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+ <div id="home-section" class="section">
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+ <h3 class="section-header">
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+ <a href="./index.html">Home</a>
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+ <a href="./index.html#classes">Classes</a>
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+ <a href="./index.html#methods">Methods</a>
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+ </h3>
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+ </div>
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+ </div>
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+
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+ <div id="project-metadata">
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+
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+
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+ <div id="fileindex-section" class="section project-section">
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+ <h3 class="section-header">Files</h3>
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+ <ul>
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+
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+ <li class="file"><a href="./CHANGES.html">CHANGES</a></li>
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+
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+ <li class="file"><a href="./LICENSE.html">LICENSE</a></li>
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+
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+ <li class="file"><a href="./README.html">README</a></li>
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+
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+ </ul>
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+ </div>
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+
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+
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+ <div id="classindex-section" class="section project-section">
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+ <h3 class="section-header">Class Index
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+ <span class="search-toggle"><img src="./images/find.png"
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+ height="16" width="16" alt="[+]"
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+ title="show/hide quicksearch" /></span></h3>
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+ <form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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+ <fieldset>
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+ <legend>Quicksearch</legend>
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+ <input type="text" name="quicksearch" value=""
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+ class="quicksearch-field" />
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+ </fieldset>
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+ </form>
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+
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+ <ul class="link-list">
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+
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+ </ul>
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+ <div id="no-class-search-results" style="display: none;">No matching classes.</div>
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+ </div>
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+
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+
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+ </div>
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+ </div>
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+
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+ <div id="documentation">
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+
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+ <h2>t2-web </h2>
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+
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+ <p>The MIT License</p>
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+
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+ <p>Copyright © 2010 - Netherlands Bioinformatics Centre</p>
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+
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+ <p>Permission is hereby granted, free of charge, to any person obtaining a
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+ copy of this software and associated documentation files (the
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+ “Software”), to deal in the Software without restriction, including
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+ without limitation the rights to use, copy, modify, merge, publish,
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+ distribute, sublicense, and/or sell copies of the Software, and to permit
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+ persons to whom the Software is furnished to do so, subject to the
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+ following conditions:</p>
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+
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+ <p>The above copyright notice and this permission notice shall be included in
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+ all copies or substantial portions of the Software.</p>
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+
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+ <p>THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS
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+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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+ DEALINGS IN THE SOFTWARE.</p>
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+
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+ </div>
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ <p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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+ Rdoc Generator</a> 2</small>.</p>
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+ </div>
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+ </body>
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+ </html>
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+
@@ -0,0 +1,141 @@
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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+
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+ <title>File: README [web-t2 Docs]</title>
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+
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+ <link type="text/css" media="screen" href="./rdoc.css" rel="stylesheet" />
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+
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+ <script src="./js/jquery.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/thickbox-compressed.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/quicksearch.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ <script src="./js/darkfish.js" type="text/javascript"
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+ charset="utf-8"></script>
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+ </head>
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+
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+ <body class="file">
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+ <div id="metadata">
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+ <div id="home-metadata">
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+ <div id="home-section" class="section">
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+ <h3 class="section-header">
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+ <a href="./index.html">Home</a>
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+ <a href="./index.html#classes">Classes</a>
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+ <a href="./index.html#methods">Methods</a>
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+ </h3>
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+ </div>
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+ </div>
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+
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+ <div id="project-metadata">
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+
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+
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+ <div id="fileindex-section" class="section project-section">
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+ <h3 class="section-header">Files</h3>
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+ <ul>
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+
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+ <li class="file"><a href="./CHANGES.html">CHANGES</a></li>
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+
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+ <li class="file"><a href="./LICENSE.html">LICENSE</a></li>
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+
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+ <li class="file"><a href="./README.html">README</a></li>
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+
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+ </ul>
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+ </div>
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+
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+
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+ <div id="classindex-section" class="section project-section">
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+ <h3 class="section-header">Class Index
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+ <span class="search-toggle"><img src="./images/find.png"
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+ height="16" width="16" alt="[+]"
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+ title="show/hide quicksearch" /></span></h3>
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+ <form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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+ <fieldset>
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+ <legend>Quicksearch</legend>
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+ <input type="text" name="quicksearch" value=""
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+ class="quicksearch-field" />
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+ </fieldset>
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+ </form>
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+
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+ <ul class="link-list">
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+
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+ </ul>
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+ <div id="no-class-search-results" style="display: none;">No matching classes.</div>
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+ </div>
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+
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+
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+ </div>
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+ </div>
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+
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+ <div id="documentation">
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+
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+ <h1>t2-web interface generator</h1>
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+ <table class="rdoc-list"><tr><td class="rdoc-term"><p>Authors</p></td>
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+ <td>
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+ <p>Konstantinos Karasavvas</p>
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+ </td></tr><tr><td class="rdoc-term"><p>Gem Version</p></td>
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+ <td>
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+ <p>0.0.7</p>
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+ </td></tr><tr><td class="rdoc-term"><p>Contact</p></td>
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+ <td>
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+ <p><a href="mailto:kostas.karasavvas@nbic.nl">kostas.karasavvas@nbic.nl</a></p>
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+ </td></tr><tr><td class="rdoc-term"><p>Licence</p></td>
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+ <td>
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+ <p>MIT (See LICENCE or <a
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+ href="http://www.opensource.org/licenses/mit-license">www.opensource.org/licenses/mit-license</a>)</p>
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+ </td></tr><tr><td class="rdoc-term"><p>Copyright</p></td>
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+ <td>
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+ <p>© 2012 Netherlands Bioinformatics Centre, The Netherlands</p>
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+ </td></tr></table>
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+
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+ <h2>Synopsis</h2>
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+
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+ <p>This web application accepts a myExperiment workflow identifier and
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+ constructs a web form to allow end-users to configure and execute that
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+ workflow via a web browser with no other dependencies.. The web form
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+ interface is as good as the description provided in the workflow itself in
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+ myExperiment.</p>
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+
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+ <h2>Installation</h2>
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+
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+ <pre>[sudo] gem install t2-web</pre>
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+
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+ <h2>Usage</h2>
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+
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+ <p>t2_webapp</p>
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+
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+ <p>Runs the web application at port 9494 and waits for incoming requests.</p>
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+
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+ <h2>References</h2>
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+ <table class="rdoc-list"><tr><td class="rdoc-term"><p>Taverna to Web Form Generator</p></td>
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+ <td>
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+ <p><a
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+ href="https://trac.nbic.nl/elabfactory/wiki/t2web">trac.nbic.nl/elabfactory/wiki/t2web</a></p>
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+ </td></tr><tr><td class="rdoc-term"><p>Taverna2</p></td>
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+ <td>
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+ <p><a href="http://www.taverna.org.uk">www.taverna.org.uk</a></p>
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+ </td></tr><tr><td class="rdoc-term"><p>myExperiment</p></td>
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+ <td>
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+ <p><a href="http://www.myexperiment.org">www.myexperiment.org</a></p>
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+ </td></tr></table>
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+
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+ <h2>Semantic Versioning</h2>
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+
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+ <p>This module uses semantic versioning concepts from <a
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+ href="http://semver.org/.">semver.org/.</a></p>
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+
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+ </div>
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ <p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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+ Rdoc Generator</a> 2</small>.</p>
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+ </div>
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+ </body>
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+ </html>
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+
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+ Tue, 13 Mar 2012 14:19:31 +0100
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+ LICENSE Fri, 22 Jul 2011 16:33:48 +0200
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+ README Tue, 13 Mar 2012 14:18:56 +0100
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+ CHANGES Tue, 13 Mar 2012 14:19:07 +0100
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