sushi_fabric 1.2.6 → 1.2.7

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20240806-095335'
+# Version = '20240806-113507'
 
 require 'csv'
 require 'fileutils'
@@ -711,7 +711,11 @@ rm -rf #{@scratch_dir} || exit 1
     @out.close
   end
   def sample_mode
-    selected_samples = Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
+    selected_samples = unless @params['samples'].empty?
+                         Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
+                       else
+                         Hash[*@dataset_hash.map{|row| row['Name']}.map{|sample_name| [sample_name, true]}.flatten]
+                       end
     @dataset_hash.each_with_index do |row, i|
       @dataset = Hash[*row.map{|key,value| [key.gsub(/\[.+\]/,'').strip, value]}.flatten]
       if selected_samples[@dataset['Name']]

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "1.2.6"
+  VERSION = "1.2.7"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 1.2.6
+  version: 1.2.7
 platform: ruby
 authors:
 - Functional Genomics Center Zurich