sushi_fabric 1.1.2 → 1.1.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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+  data.tar.gz: 03fa7b3efd213571886969d39e40cdb88e6af13e3b37a0ab195fafcc94a061da
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data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20211015-142855'
+# Version = '20211104-160141'
 
 require 'csv'
 require 'fileutils'
@@ -240,8 +240,6 @@ class SushiApp
     @params['cores'] = nil
     @params['ram'] = nil
     @params['scratch'] = nil
-    @params['node'] = ''
-    @params['queue'] = ''
     @params['partition'] = ''
     @params['process_mode'] = 'SAMPLE'
     @params['samples'] = ''
@@ -517,6 +515,7 @@ rm -rf #{@scratch_dir} || exit 1
     gsub_options << "-p #{@params['partition']}" unless @params['partition'].to_s.empty?
     gsub_options << "-r #{@params['ram']}" unless @params['ram'].to_s.empty?
     gsub_options << "-s #{@params['scratch']}" unless @params['scratch'].to_s.empty?
+    gsub_options << "-i #{@params['nice']}" unless @params['nice'].to_s.empty?
     command = "wfm_monitoring --server #{WORKFLOW_MANAGER} --user #{@user} --project #{@project.gsub(/p/,'')} --logdir #{@gstore_script_dir} #{job_script} #{gsub_options.join(' ')}"
     puts "submit: #{command}"
 

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "1.1.2"
+  VERSION = "1.1.3"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 1.1.2
+  version: 1.1.3
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-10-15 00:00:00.000000000 Z
+date: 2021-11-04 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler