sushi_fabric 1.1.2 → 1.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/sushi_fabric/sushiApp.rb +2 -3
- data/lib/sushi_fabric/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: 07c091813e683833c643c422de04c2a225ad3475ce46cf864003836c6b1056f9
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4
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data.tar.gz: 03fa7b3efd213571886969d39e40cdb88e6af13e3b37a0ab195fafcc94a061da
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SHA512:
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 49dc7c8c246fb31206cf949c0f2279ed6bced0d3c947a6c843cc0017899ede527650b6b862ff9846f8504be70e2a8360742ec68c40638878db647f3707d3f796
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7
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data.tar.gz: 23ceb3abf7b4928ccdc92b1fc04fe745d9924374a7767d583f5a64e8947464463aa4577ba548ef1648cf4ce13c0a5f39aae93ba5468bce0d8d809c4aada436e2
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@@ -1,6 +1,6 @@
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#!/usr/bin/env ruby
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# encoding: utf-8
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-
# Version = '
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# Version = '20211104-160141'
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require 'csv'
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require 'fileutils'
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@@ -240,8 +240,6 @@ class SushiApp
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@params['cores'] = nil
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@params['ram'] = nil
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@params['scratch'] = nil
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@params['node'] = ''
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-
@params['queue'] = ''
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@params['partition'] = ''
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@params['process_mode'] = 'SAMPLE'
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@params['samples'] = ''
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@@ -517,6 +515,7 @@ rm -rf #{@scratch_dir} || exit 1
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gsub_options << "-p #{@params['partition']}" unless @params['partition'].to_s.empty?
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gsub_options << "-r #{@params['ram']}" unless @params['ram'].to_s.empty?
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gsub_options << "-s #{@params['scratch']}" unless @params['scratch'].to_s.empty?
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gsub_options << "-i #{@params['nice']}" unless @params['nice'].to_s.empty?
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command = "wfm_monitoring --server #{WORKFLOW_MANAGER} --user #{@user} --project #{@project.gsub(/p/,'')} --logdir #{@gstore_script_dir} #{job_script} #{gsub_options.join(' ')}"
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puts "submit: #{command}"
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data/lib/sushi_fabric/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: sushi_fabric
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version: !ruby/object:Gem::Version
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version: 1.1.
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version: 1.1.3
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platform: ruby
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authors:
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- Functional Genomics Center Zurich
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2021-
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date: 2021-11-04 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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