sushi_fabric 0.8.1 → 0.8.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: c39c5d79fe90945c110d72544e3b110448bbcecf
+  metadata.gz: 645b717ca99202bc4096078615202d634a2994f7
+  data.tar.gz: a6791499cf55664c1598b52ada177cf91000bc07
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data/bin/sushi_fabric

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20170608-164804'
+# Version = '20170908-105900'
 
 require 'sushi_fabric'
 
@@ -21,6 +21,7 @@ Usage:
   o.on(:load_path, '-I load_path', '--load_path', 'Add path where SushiApp class is located (default: ./lib)')
   o.on(:next_dataset_name, '-n next_dataset_name', '--next_dataset_name', 'Next DataSet Name (default: Analysis_Category+ID+Date )')
   o.on(:off_bfab, '-f', '--off_bfab', 'Do NOT register the dataset in BFabric (default: false, namely register in BFabric)')
+  o.on(:mango_run_name, '-g mango_run_name', '--mango_run_name', 'ManGO RunName_oBFabricID')
   o.parse!(ARGV)
 end
 opt.project = 'p' + opt.project
@@ -74,6 +75,9 @@ end
 if opt.next_dataset_name
   usecase.next_dataset_name = opt.next_dataset_name
 end
+if opt.mango_run_name
+  usecase.mango_run_name = opt.mango_run_name
+end
 if opt.run_mode
   usecase.run
 else

data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20170905-154636'
+# Version = '20170908-110323'
 
 require 'csv'
 require 'fileutils'
@@ -220,6 +220,7 @@ class SushiApp
   attr_accessor :current_user
   attr_accessor :logger
   attr_accessor :off_bfabric_registration
+  attr_accessor :mango_run_name
   def initialize
     @gstore_dir = GSTORE_DIR
     @project = nil
@@ -676,6 +677,9 @@ rm -rf #{@scratch_dir} || exit 1
       if comment = data_set_hash['Comment'] and !comment.to_s.empty?
         data_set.comment = comment
       end
+      if @mango_run_name
+        data_set.run_name_order_id = @mango_run_name
+      end
 
       sample_hash = {}
       rows.each do |row|

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "0.8.1"
+  VERSION = "0.8.2"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 0.8.1
+  version: 0.8.2
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-09-05 00:00:00.000000000 Z
+date: 2017-09-08 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler