sushi_fabric 0.7.3 → 0.7.4

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: ed4f8e395298758aef808482287e2bf1c5a0bcfe
-  data.tar.gz: d97617cc762c64bf0835cb76a31a6a1dacd51e43
+  metadata.gz: 3e5fb02a435be2698610bdb4af94b753784fcb3b
+  data.tar.gz: 3de84c0240f0df13c36bcacf83c7e37b5b4c5402
 SHA512:
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-  data.tar.gz: d369c6a5bbaebaeff3b7b2522544cec99b5e092e1b9c3f4b6900a398e4be736327d1f90728103e4011f2c05f9b3498af030c003f4f6c8af891785b6549b80091
+  metadata.gz: 481cac5dac220f4b597f117fe1228bb10203cd22154e5100d9193a43f3bd7ce8a6e80fa3d7c4c94ec57c8becb82adb8a33dd76e81adae75d8b4cffa6377403c8
+  data.tar.gz: 5a7e899a7faa8fc7a1513403109f56e7cc1aa1d8420ecd2cfd226b7679f8840c3287b2f11c9bf0d108cbd7a17c1470f9a8b6596a9b698995f03dffafa05ac728

data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20170410-034927'
+# Version = '20170413-113844'
 
 require 'csv'
 require 'fileutils'
@@ -367,16 +367,8 @@ class SushiApp
     FileUtils.mkdir_p(@job_script_dir)
   end
   def check_latest_module_version(mod)
-    command = "module whatis #{mod}"
-    IO.popen(command) do |io|
-      latest_mod = nil
-      while line = io.gets
-        unless line.chomp.strip.empty?
-          latest_mod = line.split.first
-          break
-        end
-      end
-    end
+    command_out =  %x[ bash -lc "source #{@module_source}; module whatis #{mod} 2>&1" ]
+    latest_mod = command_out.split.first
     latest_mod = nil if latest_mod == "Failed"
     latest_mod
   end
@@ -398,10 +390,10 @@ class SushiApp
                        ""
                      end
     module_add_commands = if @modules and !@modules.empty?
-                            #modules_with_version = @modules.map{|mod| check_latest_module_version(mod)}
-                            #modules_with_version.compact!
-                            #"module add #{modules_with_version.join(' ')}"
-                            "module add #{@modules.join(' ')}"
+                            modules_with_version = @modules.map{|mod| check_latest_module_version(mod)}
+                            modules_with_version.compact!
+                            "module add #{modules_with_version.join(' ')}"
+                            #"module add #{@modules.join(' ')}"
                           else
                             ""
                           end

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "0.7.3"
+  VERSION = "0.7.4"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 0.7.3
+  version: 0.7.4
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-04-10 00:00:00.000000000 Z
+date: 2017-04-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler