sushi_fabric 0.5.8 → 0.5.9

data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20160331-140604'
+# Version = '20160331-152819'
 
 require 'csv'
 require 'fileutils'
@@ -355,15 +355,15 @@ class SushiApp
                    else
                      @scratch_result_dir + '_temp$$'
                    end
-    parent_data_set_job_ids = if @dataset_sushi_id and data_set = DataSet.find_by_id(@dataset_sushi_id.to_i)
-                                parent_data_set = data_set.data_set
-                                parent_data_set.jobs.map{|job| job.submit_job_id}.join(",")
+    hold_jid_option = if @dataset_sushi_id and parent_data_set = DataSet.find_by_id(@dataset_sushi_id.to_i) and !parent_data_set.jobs.empty?
+                                parent_data_set_job_ids = parent_data_set.jobs.map{|job| job.submit_job_id}.join(",")
+                                "#\$ -hold_jid #{parent_data_set_job_ids}"
                               else
                                 ''
                               end
     @out.print <<-EOF
 #!/bin/bash
-#\$ -hold_jid #{parent_data_set_job_ids}
+#{hold_jid_option}
 set -e
 set -o pipefail
 

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "0.5.8"
+  VERSION = "0.5.9"
 end

metadata

@@ -2,7 +2,7 @@
 name: sushi_fabric
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 0.5.8
+  version: 0.5.9
 platform: ruby
 authors: 
 - Functional Genomics Center Zurich