strain-code 0.3.5 → 0.3.6

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Files changed (4) hide show
  1. checksums.yaml +4 -4
  2. data/data/catalogues.yaml +69 -47
  3. data/lib/strain-code/version.rb +1 -1
  4. metadata +2 -2
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA256:
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- data.tar.gz: e597e503d26c9b42b64e4cd3278dd643ca2acc6c1b9e7a36cc512dc2065f71de
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  SHA512:
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- metadata.gz: e53c116651a40f0ae483599d2cd202282a6e4aedd238f7b9a57cbbb8a8864a77b5496ea0467255cd683e17e0ddb57dd43aba7d4c36d612a13633bfcb7d11a8e6
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+ metadata.gz: 50da10b3e1f95f16a80b13c150d927d3a5d2b6bd483d1b22248ad37253d5bf2a2387807cd9f4c61a74ad90b1a99df5fd69f2afaed345d0ba55418ffa4cce02a2
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+ data.tar.gz: f5e3d4251f4857cb3f6fd37a33f9c4eb848b0b689234e74c9ea22d7315182b360615c0da0228109c48a8b571b4aae766b074600574713b07c7a084e04e694f20
data/data/catalogues.yaml CHANGED
@@ -62,22 +62,43 @@ catalogues:
62
62
  - codes: [ ATCC ]
63
63
  country_code: US
64
64
  name: American Type Culture Collection
65
- url: 'https://www.atcc.org'
66
- url_pattern: 'https://www.atcc.org/products/%s'
65
+ url: "https://www.atcc.org"
66
+ url_pattern: "https://www.atcc.org/products/%s"
67
+ - codes: [ ATHUM ]
68
+ country_code: GR
69
+ name: Athens Collection of Fungi
70
+ organization: University of Athens
67
71
 
68
72
  #--- B
73
+ - codes: [ BCC ]
74
+ country_code: TH
75
+ name: BIOTEC Culture Collection
76
+ organization: National Center for Genetic Engineering and Biotechnology
69
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  - codes: [ BCRC ]
70
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  country_code: TW
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  name: Bioresource Collection and Research Center
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  organization: Food Industry Research and Development Insitute
73
- url: 'https://catalog.bcrc.firdi.org.tw/'
74
- url_pattern: 'https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=%s'
81
+ url: "https://catalog.bcrc.firdi.org.tw/"
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+ url_pattern: "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=%s"
83
+ - codes: [ BRL ]
84
+ country_code: UK
85
+ name: Butterwick Research Laboratories
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+ - codes: [ BTCC ]
87
+ country_code: ID
88
+ name: >-
89
+ Biotechnology Culture Collection,
90
+ Research and Development Center for Biotechnology
91
+ organization: "LIPI: Indonesian Institute of Sciences"
92
+ - codes: [ BUSCOB ]
93
+ country_code: IT
94
+ name: Bologna University Scardovi Collection of Bifidobacteria
95
+ organization: Bologna University
75
96
 
76
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  #--- C
77
98
  - codes: [ CAIM ]
78
99
  country_code: MX
79
100
  name: Collection of Aquatic Important Microorganisms
80
- organization: 'CIAD: Centro de Investigación en Alimentación y Desarrollo'
101
+ organization: "CIAD: Centro de Investigación en Alimentación y Desarrollo"
81
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  url: "https://www.ciad.mx/caim"
82
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  url_pattern:
83
104
  "https://www.ciad.mx/caim/busqueda.php?searchtype=caim&criterio=%s"
@@ -85,19 +106,19 @@ catalogues:
85
106
  name: Culture Collection of Autotrophic Organisms
86
107
  organization: Czech Academy of Sciences
87
108
  country_code: CZ
88
- url_pattern: 'https://ccala.butbn.cas.cz/strain/%s'
109
+ url_pattern: "https://ccala.butbn.cas.cz/strain/%s"
89
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  - codes: [ CCM ]
90
111
  name: Czech Collection of Microorganisms
91
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  organization: Masaryk University
92
113
  country_code: CZ
93
- url_pattern: 'https://www.sci.muni.cz/ccm/bakterie/camb/%s'
114
+ url_pattern: "https://www.sci.muni.cz/ccm/bakterie/camb/%s"
94
115
  - codes: [ CCMP ]
95
116
  name: >-
96
117
  NCMA: National Center for Marine Algae and Microbiota,
97
118
  formerly Culture Collection for Marine Phytoplankton
98
119
  organization: Bigelow Laboratory for Ocean Sciences
99
120
  country_code: US
100
- url_pattern: 'https://ncma.bigelow.org/CCMP%s'
121
+ url_pattern: "https://ncma.bigelow.org/CCMP%s"
101
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  - codes: [ CCTCC ]
102
123
  country_code: CN
103
124
  name: China Center for Type Culture Collection
@@ -120,9 +141,9 @@ catalogues:
120
141
  name: China General Microbiological Culture Collection Center
121
142
  organization: National Science and Technology Infrastructure
122
143
  country_code: CN
123
- url_pattern: 'https://cgmcc.net/english/search?stn=%s'
144
+ url_pattern: "https://cgmcc.net/english/search?stn=%s"
124
145
  # From NCBI Taxonomy (not working):
125
- # 'http://www.cgmcc.net/english/cata.php?stn=CGMCC%%20%s'
146
+ # "http://www.cgmcc.net/english/cata.php?stn=CGMCC%%20%s"
126
147
  _examples: [ CGMCC 1.19149 ]
127
148
  _tested: 2025-03-18
128
149
  - codes: [ CICC ]
@@ -130,14 +151,14 @@ catalogues:
130
151
  organization:
131
152
  China National Research Institute of Food & Fermentation Industries
132
153
  country_code: CN
133
- url_pattern: 'http://www.china-cicc.org/search/?classtype=1&keyword=%s'
154
+ url_pattern: "http://www.china-cicc.org/search/?classtype=1&keyword=%s"
134
155
  - codes: [ CIP ]
135
156
  name: Collection de l'Institut Pasteur
136
157
  name_en: Collection of the Institut Pasteur
137
158
  organization: Institut Pasteur
138
159
  country_code: FR
139
160
  url_pattern:
140
- 'https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%%20%s'
161
+ "https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%%20%s"
141
162
 
142
163
  #--- D
143
164
  - codes: [ DSM ]
@@ -147,9 +168,9 @@ catalogues:
147
168
  organization: >-
148
169
  Leibniz Institute DSMZ - German Collection of Microorganisms and
149
170
  Cell Cultures GmbH
150
- url: 'https://www.dsmz.de/collection/catalogue'
171
+ url: "https://www.dsmz.de/collection/catalogue"
151
172
  url_pattern:
152
- 'https://www.dsmz.de/collection/catalogue/details/culture/DSM-%s'
173
+ "https://www.dsmz.de/collection/catalogue/details/culture/DSM-%s"
153
174
 
154
175
  #--- E
155
176
 
@@ -165,8 +186,8 @@ catalogues:
165
186
  country_code: CN
166
187
  name: Guangdong Microbial Culture Collection Center
167
188
  organization: Guangdong Academy of Sciences
168
- url:
169
- 'http://english.gdim.cn/research/researchdivisions/guangdongmicrobialculturecollectioncentergdmcc/'
189
+ url: "http://english.gdim.cn/research/researchdivisions/\
190
+ guangdongmicrobialculturecollectioncentergdmcc/"
170
191
  - codes: [ GIFU, GTC ]
171
192
  country_code: JP
172
193
  name: Gifu Type Culture Collection
@@ -207,47 +228,47 @@ catalogues:
207
228
  _tested: 2025-03-20
208
229
  - codes: [ IFO, NBRC ]
209
230
  country_code: JP
210
- name: 'NITE Biological Resource Center'
211
- organization: 'NITE: National Institute of Technology and Evaluation'
212
- url: 'https://www.nite.go.jp/nbrc/catalogue/'
213
- url_pattern:
214
- 'https://www.nite.go.jp/nbrc/catalogue/NBRCCatalogueDetailServlet?ID=IFO&CAT=%s'
231
+ name: "NITE Biological Resource Center"
232
+ organization: "NITE: National Institute of Technology and Evaluation"
233
+ url: "https://www.nite.go.jp/nbrc/catalogue/"
234
+ url_pattern: "https://www.nite.go.jp/nbrc/catalogue/\
235
+ NBRCCatalogueDetailServlet?ID=IFO&CAT=%s"
215
236
  - codes: [ ITM ]
216
237
  name: >-
217
238
  Belgian Coordinated Collections of Microorganisms (BCCM),
218
239
  Institute of Tropical Medicine Antwerp Mycobacteria Collection
219
- organization: 'BELSPO: Belgian Science Policy'
240
+ organization: "BELSPO: Belgian Science Policy"
220
241
  country_code: BE
221
242
  url_pattern:
222
- 'https://bccm.belspo.be/catalogues/bm-details?accession_number=ITM%%20%s'
243
+ "https://bccm.belspo.be/catalogues/bm-details?accession_number=ITM%%20%s"
223
244
 
224
245
  #--- J
225
246
  - codes: [ JCM ]
226
247
  country_code: JP
227
248
  name: Japan Collection of Microorganisms
228
249
  organization: RIKEN
229
- url: 'https://jcm.brc.riken.jp/en/'
230
- url_pattern: 'https://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=%s'
250
+ url: "https://jcm.brc.riken.jp/en/"
251
+ url_pattern: "https://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=%s"
231
252
  - codes: [ JMRC ]
232
253
  name: Jena Microbial Resource Collection
233
254
  organization: Friedrich Schiller University Jena
234
255
  country_name: DE
235
- url_pattern: 'http://www.jmrc.uni-jena.de/data.php?fsu=%s'
256
+ url_pattern: "http://www.jmrc.uni-jena.de/data.php?fsu=%s"
236
257
 
237
258
  #--- K
238
259
  - codes: [ KACC ]
239
260
  name: Korean Agricultural Culture Collection
240
261
  organization: National Academy of Agricultural Science
241
262
  country_code: KR
242
- url_pattern:
243
- 'https://genebank.rda.go.kr/eng/mic/cat/MicrobeSearch.do?sSearchWith=no&sTxt1=%s'
263
+ url_pattern: "https://genebank.rda.go.kr/eng/mic/cat/\
264
+ MicrobeSearch.do?sSearchWith=no&sTxt1=%s"
244
265
  - codes: [ KCTC ]
245
266
  country_code: KR
246
267
  name: Korean Collection for Type Cultures
247
268
  organization:
248
- 'KRIBB: Korea Research Institute of Bioscience and Biotechnology'
249
- url: 'https://kctc.kribb.re.kr/en/collection/'
250
- url_pattern: 'https://kctc.kribb.re.kr/collection/view?sn=%s'
269
+ "KRIBB: Korea Research Institute of Bioscience and Biotechnology"
270
+ url: "https://kctc.kribb.re.kr/en/collection/"
271
+ url_pattern: "https://kctc.kribb.re.kr/collection/view?sn=%s"
251
272
  _examples: [ KCTC 92132 ]
252
273
  _tested: 2025-03-18
253
274
 
@@ -285,9 +306,10 @@ catalogues:
285
306
  country_code: UK
286
307
  name: National Collection of Type Cultures
287
308
  organization: Health Security Agency
288
- url: 'https://www.culturecollections.org.uk/products/bacteria-and-mycoplasmas/'
289
- url_pattern:
290
- 'https://www.culturecollections.org.uk/products/bacteria/detail.jsp?collection=nctc&refId=NCTC+%s'
309
+ url: "https://www.culturecollections.org.uk/products/\
310
+ bacteria-and-mycoplasmas/"
311
+ url_pattern: "https://www.culturecollections.org.uk/products/bacteria/\
312
+ detail.jsp?collection=nctc&refId=NCTC+%s"
291
313
  - codes: [ NCIB ]
292
314
  country_code: UK
293
315
  name: National Collection of Industrial Bacteria
@@ -301,12 +323,12 @@ catalogues:
301
323
  name: North East Pacific Culture Collection
302
324
  organization: The University of British Columbia
303
325
  country_code: CA
304
- url_pattern: 'https://db.botany.ubc.ca/cccm/mfa/%s'
326
+ url_pattern: "https://db.botany.ubc.ca/cccm/mfa/%s"
305
327
  - codes: [ NIES ]
306
328
  name: National Institute for Environmental Studies Collection
307
329
  organization: National Institute for Environmental Studies
308
330
  country_code: JP
309
- url_pattern: 'https://mcc.nies.go.jp/numberSearch.do?strainNumber=%s'
331
+ url_pattern: "https://mcc.nies.go.jp/numberSearch.do?strainNumber=%s"
310
332
  - codes: [ NRC, NRCC ]
311
333
  country_code: CA
312
334
  name: Division of Biological Sciences, National Research Council of Canada
@@ -317,8 +339,8 @@ catalogues:
317
339
  Agricultural Research Service Culture Collection,
318
340
  formerly Northern Regional Research Laboratory
319
341
  organization: National Center for Agricultural Utilization Research
320
- url_pattern:
321
- 'https://nrrl.ncaur.usda.gov/cgi-bin/usda/prokaryote/report.html?nrrlcodes=%s'
342
+ url_pattern: "https://nrrl.ncaur.usda.gov/cgi-bin/usda/prokaryote/\
343
+ report.html?nrrlcodes=%s"
322
344
 
323
345
  #--- O
324
346
  - codes: [ OCM ]
@@ -332,7 +354,7 @@ catalogues:
332
354
  organization: Institut Pasteur
333
355
  country_code: FR
334
356
  url_pattern:
335
- 'https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=PCC%%20%s'
357
+ "https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=PCC%%20%s"
336
358
 
337
359
  #--- Q
338
360
 
@@ -345,32 +367,32 @@ catalogues:
345
367
  organization: University of Göttingen
346
368
  country_code: DE
347
369
  url_pattern:
348
- 'https://sagdb.uni-goettingen.de/detailedList.php?str_number=%s'
370
+ "https://sagdb.uni-goettingen.de/detailedList.php?str_number=%s"
349
371
 
350
372
  #--- T
351
373
  - codes: [ TBRC ]
352
374
  name: Thailand Bioresource Research Center
353
375
  organization: Thailand Bioresource Research Center
354
376
  country_code: TH
355
- url_pattern: 'https://tbrcnetwork.org/microb_detail.php?code=TBRC_%s'
377
+ url_pattern: "https://tbrcnetwork.org/microb_detail.php?code=TBRC_%s"
356
378
 
357
379
  #--- U
358
380
  - codes: [ UAMH ]
359
381
  country_code: CA
360
382
  name: University of Alberta Mold Herbarium and Culture Collection
361
383
  organization: University of Alberta
362
- url: 'https://www.uamh.ca/index.html'
363
- url_pattern: 'https://www.uamh.ca/details.php?id=%s'
384
+ url: "https://www.uamh.ca/index.html"
385
+ url_pattern: "https://www.uamh.ca/details.php?id=%s"
364
386
  _examples: [ UAMH 2956 ]
365
387
  _tested: 2025-03-20
366
388
  - codes: [ ULC ]
367
389
  name: >-
368
390
  Belgian Coordinated Collections of Microorganisms (BCCM),
369
391
  University of Liège Cyanobacteria Collection
370
- organization: 'BELSPO: Belgian Science Policy'
392
+ organization: "BELSPO: Belgian Science Policy"
371
393
  country_code: BE
372
394
  url_pattern:
373
- 'https://bccm.belspo.be/catalogues/bm-details?accession_number=ULC%%20%s'
395
+ "https://bccm.belspo.be/catalogues/bm-details?accession_number=ULC%%20%s"
374
396
 
375
397
  #--- V
376
398
  - codes: [ VKM ]
@@ -380,7 +402,7 @@ catalogues:
380
402
  Pushchino Scientific Center for Biological Research of the
381
403
  Russian Academy of Sciences
382
404
  country_code: RU
383
- url_pattern: 'http://www.vkm.ru/strains.php?vkm=%s'
405
+ url_pattern: "http://www.vkm.ru/strains.php?vkm=%s"
384
406
 
385
407
  #--- W
386
408
 
@@ -391,4 +413,4 @@ catalogues:
391
413
  #--- Z
392
414
 
393
415
  manifest:
394
- update: 2025-03-18
416
+ update: 2025-03-25
data/lib/strain-code/version.rb CHANGED
@@ -1,5 +1,5 @@
1
1
  class StrainCode
2
- VERSION = '0.3.5'
2
+ VERSION = '0.3.6'
3
3
  VERSION_ARRAY = VERSION.split(/\./).map { |x| x.to_i } # :nodoc:
4
4
  VERSION_MAJOR = VERSION_ARRAY[0] # :nodoc:
5
5
  VERSION_MINOR = VERSION_ARRAY[1] # :nodoc:
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: strain-code
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.3.5
4
+ version: 0.3.6
5
5
  platform: ruby
6
6
  authors:
7
7
  - Luis M. Rodriguez-R
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2025-03-20 00:00:00.000000000 Z
11
+ date: 2025-03-25 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: rake