strain-code 0.1.0 → 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/data/catalogues.yaml +255 -0
- data/lib/strain_code/version.rb +1 -1
- metadata +2 -1
checksums.yaml
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ef54441ed7eb018a37e99b16ec58a9c9ef16e0f1338f1f785f3ebe2db1a432cf
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data.tar.gz: d4c653cc8d490150ce4b892c44062dbc718d45f39ad05c9a5ba212ce4a6e7e03
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metadata.gz:
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metadata.gz: 95bd9c3ea251c15da59776692dddfa4ae4a14fb56c122a8e166f825fadc9fc373e4d33f66eac8bde94c6eb8748f045137ed87072cf5d752c157447ddaa4ff897
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data.tar.gz: '08008703c1d9e02afd544901365d4bee620d1f78c3772257b36ad8d3885e1610929fc91c958038f4d1bc11a09983312ef08425778aeb5c9e7e5902ac20ad8847'
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# List of catalogues following the scheme (all optional except `codes`):
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# - codes: (mandatory) Array of catalogue codes
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# - country_code: ISO 3166-1 two-letter country code
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# - name: Name of the culture collection, ideally using the spelling that
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# matches a catalogue code
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# - name_en: Name of the culture collection in English, if +name+ is spelled in
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# a different language
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# - organization: Name of the organization generating the catalogue. If a
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# well-known acronym exists, this field should start with this acronym
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# followed by colon (:) and the spelled-out name of the organization
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# - url: URL of the catalogue's main website
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# - url_pattern: URL pattern indicating how to form links to catalogue entries,
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# with "%s" indicating the non-code part of the culture number
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#
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# Additionally, fields starting with `_` are ignored in the basecode, and
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# notably include `_examples` (an array of strain numbers) and `_tested`
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# (the date in which the website was last tested)
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#
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# See also:
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# - https://ftp.ncbi.nih.gov/pub/taxonomy/Ccode_dump.txt
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# - https://jcm.brc.riken.jp/en/abbr_e
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catalogues:
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- codes: [ ABB ]
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country_code: KR
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name: Asian Bacterial Bank
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organization: Samsung Biomedical Research Institute
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- codes: [ ACAM ]
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country_code: AU
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name: Australian Collection of Antarctic Microorganisms
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organization: University of Tasmania
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- codes: [ ACCC ]
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country_code: CN
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name: Agricultural Culture Collection of China
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organization: Chinese Academy of Agricultural Sciences
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- codes: [ ACM, UQM ]
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country_code: AU
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name: Australian Collection of Microorganisms
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organization: The University of Queensland
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- codes: [ AHN ]
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country_code: FI
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name: Anaerobe Reference Laboratory, Helsinki Collection
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- codes: [ AHU ]
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country_code: JP
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name: |
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Laboratory of Culture Collection of Microorganisms,
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Faculty of Agriculture, Hokkaido University
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organization: Hokkaido University
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- codes: [ AJ ]
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country_code: JP
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name: Central Research Laboratories, Ajinomoto Co. Inc.
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organization: Ajinomoto Co. Inc.
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- codes: [ AKU ]
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country_code: JP
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name: Faculty of Agriculture, Kyoto University
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organization: Kyoto University
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- codes: [ AMP ]
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country_code: AU
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name: Australian Mycological Panel
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- codes: [ ANMR ]
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name: Asian Network on Microbial Researches
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- codes: [ ATCC ]
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country_code: US
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name: American Type Culture Collection
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url: 'https://www.atcc.org'
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url_pattern: 'https://www.atcc.org/products/%s'
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- codes: [ DSM ]
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country_code: DE
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name: Deutsche Sammlung von Mikroorganismen und Zellkulturen
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name_en: German Collection of Microorganisms and Cell Cultures
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organization: |
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Leibniz Institute DSMZ - German Collection of Microorganisms and
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Cell Cultures GmbH
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url: 'https://www.dsmz.de/collection/catalogue'
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url_pattern:
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'https://www.dsmz.de/collection/catalogue/details/culture/DSM-%s'
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- codes: [ IFO, NBRC ]
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country_code: JP
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name: 'NITE Biological Resource Center'
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organization: 'NITE: National Institute of Technology and Evaluation'
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url: 'https://www.nite.go.jp/nbrc/catalogue/'
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url_pattern:
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'https://www.nite.go.jp/nbrc/catalogue/NBRCCatalogueDetailServlet?ID=IFO&CAT=%s'
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- codes: [ JCM ]
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country_code: JP
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name: 'Japan Collection of Microorganisms'
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organization: RIKEN
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url: 'https://jcm.brc.riken.jp/en/'
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url_pattern: 'https://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=%s'
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- codes: [ KCTC ]
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country_code: KR
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name: Korean Collection for Type Cultures
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organization:
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'KRIBB: Korea Research Institute of Bioscience and Biotechnology'
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url: 'https://kctc.kribb.re.kr/en/collection/'
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url_pattern: 'https://kctc.kribb.re.kr/collection/view?sn=%s'
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_examples: [ KCTC 92132 ]
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_tested: 2025-03-18
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- codes: [ NCTC ]
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country_code: UK
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name: National Collection of Type Cultures
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organization: Health Security Agency
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url: 'https://www.culturecollections.org.uk/products/bacteria-and-mycoplasmas/'
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url_pattern:
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'https://www.culturecollections.org.uk/products/bacteria/detail.jsp?collection=nctc&refId=NCTC+%s'
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- codes: [ BCRC ]
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country_code: TW
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name: Bioresource Collection and Research Center
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organization: Food Industry Research and Development Insitute
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url: 'https://catalog.bcrc.firdi.org.tw/'
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url_pattern: 'https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=%s'
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- codes: [ CAIM ]
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country_code: MX
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name: Collection of Aquatic Important Microorganisms
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organization: 'CIAD: Centro de Investigación en Alimentación y Desarrollo'
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url: 'https://www.ciad.mx/caim'
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url_pattern:
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'https://www.ciad.mx/caim/busqueda.php?searchtype=caim&criterio=%s'
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- codes: [ CCALA ]
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name: Culture Collection of Autotrophic Organisms
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organization: Czech Academy of Sciences
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country_code: CZ
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url_pattern: 'https://ccala.butbn.cas.cz/strain/%s'
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- codes: [ CCM ]
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name: Czech Collection of Microorganisms
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organization: Masaryk University
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country_code: CZ
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url_pattern: 'https://www.sci.muni.cz/ccm/bakterie/camb/%s'
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- codes: [ CGMCC, AS ]
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name: China General Microbiological Culture Collection Center
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organization: National Science and Technology Infrastructure
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country_code: CN
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url_pattern: 'https://cgmcc.net/english/search?stn=%s'
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# From NCBI Taxonomy (not working):
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# 'http://www.cgmcc.net/english/cata.php?stn=CGMCC%%20%s'
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_examples: [ CGMCC 1.19149 ]
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_tested: 2025-03-18
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- codes: [ CCMP ]
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name: |
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NCMA: National Center for Marine Algae and Microbiota,
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formerly Culture Collection for Marine Phytoplankton
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organization: Bigelow Laboratory for Ocean Sciences
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country_code: US
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url_pattern: 'https://ncma.bigelow.org/CCMP%s'
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- codes: [ CCUG ]
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name: Culture Collection University of Gothenburg
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organization: University of Gothenburg
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country_code: SE
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url_pattern: 'https://www.ccug.se/strain?id=%s'
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- codes: [ CICC ]
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name: China Center of Industrial Culture Collection
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organization:
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China National Research Institute of Food & Fermentation Industries
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country_code: CN
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url_pattern: 'http://www.china-cicc.org/search/?classtype=1&keyword=%s'
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- codes: [ CIP ]
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name: Collection de l'Institut Pasteur
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name_en: Collection of the Institut Pasteur
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organization: Institut Pasteur
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country_code: FR
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url_pattern:
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'https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%%20%s'
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- codes: [ GDMCC ]
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country_code: CN
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name: Guangdong Microbial Culture Collection Center
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organization: Guangdong Academy of Sciences
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url:
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'http://english.gdim.cn/research/researchdivisions/guangdongmicrobialculturecollectioncentergdmcc/'
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- codes: [ ITM ]
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name: |
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Belgian Coordinated Collections of Microorganisms (BCCM),
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Institute of Tropical Medicine Antwerp Mycobacteria Collection
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organization: 'BELSPO: Belgian Science Policy'
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country_code: BE
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url_pattern:
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'https://bccm.belspo.be/catalogues/bm-details?accession_number=ITM%%20%s'
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- codes: [ JMRC ]
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name: Jena Microbial Resource Collection
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organization: Friedrich Schiller University Jena
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country_name: DE
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url_pattern: 'http://www.jmrc.uni-jena.de/data.php?fsu=%s'
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- codes: [ KACC ]
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name: Korean Agricultural Culture Collection
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organization: National Academy of Agricultural Science
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country_code: KR
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url_pattern:
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'https://genebank.rda.go.kr/eng/mic/cat/MicrobeSearch.do?sSearchWith=no&sTxt1=%s'
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- codes: [ LMG ]
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name: |
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Belgian Coordinated Collections of Microorganisms (BCCM),
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Bacteria Collection Laboratorium voor Microbiologie Universiteit Gent
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name_en: |
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Belgian Coordinated Collections of Microorganisms (BCCM),
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Bacteria Collection Laboratory of Microbiology, University of Ghent
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organization: 'BELSPO: Belgian Science Policy'
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country_code: BE
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url_pattern: 'https://bccm.belspo.be/catalogues/lmg-strain-details?NUM=%s'
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- codes: [ MCCC ]
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name: Marine Culture Collection of China
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organization: Third Institute of Oceanography
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country_code: CN
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url_pattern: 'https://mccc.org.cn/detailRecord3.asp?bcbh=%s'
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- codes: [ NEPCC ]
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name: North East Pacific Culture Collection
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organization: The University of British Columbia
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country_code: CA
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url_pattern: 'https://db.botany.ubc.ca/cccm/mfa/%s'
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- codes: [ NIES ]
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name: National Institute for Environmental Studies Collection
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organization: National Institute for Environmental Studies
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country_code: JP
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url_pattern: 'https://mcc.nies.go.jp/numberSearch.do?strainNumber=%s'
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- codes: [ NRRL ]
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name: |
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Agricultural Research Service Culture Collection,
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formerly Northern Regional Research Laboratory
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organization: National Center for Agricultural Utilization Research
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country_code: US
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url_pattern:
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'https://nrrl.ncaur.usda.gov/cgi-bin/usda/prokaryote/report.html?nrrlcodes=%s'
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- codes: [ PCC ]
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name: Pasteur Cultures of Cyanobacteria
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organization: Institut Pasteur
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country_code: FR
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url_pattern:
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'https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=PCC%%20%s'
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- codes: [ SAG ]
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name: Sammlung von Algenkulturen
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name_en: Culture Collection of Algae
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organization: University of Göttingen
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country_code: DE
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url_pattern:
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'https://sagdb.uni-goettingen.de/detailedList.php?str_number=%s'
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- codes: [ TBRC ]
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name: Thailand Bioresource Research Center
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organization: Thailand Bioresource Research Center
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country_code: TH
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url_pattern: 'https://tbrcnetwork.org/microb_detail.php?code=TBRC_%s'
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- codes: [ ULC ]
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name: |
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Belgian Coordinated Collections of Microorganisms (BCCM),
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University of Liège Cyanobacteria Collection
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organization: 'BELSPO: Belgian Science Policy'
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country_code: BE
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url_pattern:
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'https://bccm.belspo.be/catalogues/bm-details?accession_number=ULC%%20%s'
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- codes: [ VKM ]
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name: ВСЕРОССИЙСКАЯ КОЛЛЕКЦИЯ МИКРООРГАНИЗМОВ
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name_en: All-Russian Collection of Microorganisms
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organization: |
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Pushchino Scientific Center for Biological Research of the
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Russian Academy of Sciences
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country_code: RU
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url_pattern: 'http://www.vkm.ru/strains.php?vkm=%s'
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manifest:
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update: 2025-03-18
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data/lib/strain_code/version.rb
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metadata
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--- !ruby/object:Gem::Specification
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name: strain-code
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version: !ruby/object:Gem::Version
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version: 0.1.
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version: 0.1.1
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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@@ -49,6 +49,7 @@ files:
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- LICENSE
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- README.md
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- Rakefile
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- data/catalogues.yaml
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- lib/strain_code.rb
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- lib/strain_code/catalogue.rb
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- lib/strain_code/common.rb
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