statsample-bivariate-extension 0.13.0 → 0.13.1
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- data/History.txt +3 -0
- data/Manifest.txt +5 -0
- data/Rakefile +2 -0
- data/data/tetmat_matrix.txt +5 -0
- data/data/tetmat_test.txt +1001 -0
- data/lib/statsample/bivariate/extension_version.rb +6 -0
- data/spec/statsample/bivariate/polychoric_spec.rb +68 -0
- data/spec/statsample/bivariate/tetrachoric_spec.rb +94 -0
- data.tar.gz.sig +0 -0
- metadata +7 -2
- metadata.gz.sig +2 -1
data/History.txt
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data/Manifest.txt
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Manifest.txt
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README.txt
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Rakefile
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data/tetmat_matrix.txt
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lib/statsample/bivariate/extension_version.rb
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lib/statsample/bivariate/polychoric.rb
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lib/statsample/bivariate/tetrachoric.rb
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spec/spec_helper.rb
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spec/statsample/bivariate/polychoric_spec.rb
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spec/statsample/bivariate/tetrachoric_spec.rb
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data/Rakefile
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346
|
+
2 2 1 1 1
|
|
347
|
+
2 2 1 1 1
|
|
348
|
+
2 2 1 1 1
|
|
349
|
+
2 2 1 1 1
|
|
350
|
+
2 2 1 1 1
|
|
351
|
+
2 2 1 1 1
|
|
352
|
+
2 2 1 1 1
|
|
353
|
+
2 2 1 1 2
|
|
354
|
+
2 2 1 1 2
|
|
355
|
+
2 2 1 1 2
|
|
356
|
+
2 2 1 1 2
|
|
357
|
+
2 2 1 1 2
|
|
358
|
+
2 2 1 1 2
|
|
359
|
+
2 2 1 1 2
|
|
360
|
+
2 2 1 1 2
|
|
361
|
+
2 2 1 1 2
|
|
362
|
+
2 2 1 1 2
|
|
363
|
+
2 2 1 1 2
|
|
364
|
+
2 2 1 1 2
|
|
365
|
+
2 2 1 1 2
|
|
366
|
+
2 2 1 1 2
|
|
367
|
+
2 2 1 1 2
|
|
368
|
+
2 2 1 1 2
|
|
369
|
+
2 2 1 1 2
|
|
370
|
+
2 2 1 1 2
|
|
371
|
+
2 2 1 1 2
|
|
372
|
+
2 2 1 1 2
|
|
373
|
+
2 2 1 1 2
|
|
374
|
+
2 2 1 1 2
|
|
375
|
+
2 2 1 1 2
|
|
376
|
+
2 2 1 1 2
|
|
377
|
+
2 2 1 1 2
|
|
378
|
+
2 2 1 1 2
|
|
379
|
+
2 2 1 1 2
|
|
380
|
+
2 2 1 1 2
|
|
381
|
+
2 2 1 1 2
|
|
382
|
+
2 2 1 1 2
|
|
383
|
+
2 2 1 1 2
|
|
384
|
+
2 2 1 1 2
|
|
385
|
+
2 2 1 1 2
|
|
386
|
+
2 2 1 1 2
|
|
387
|
+
2 2 1 1 2
|
|
388
|
+
2 2 1 1 2
|
|
389
|
+
2 2 1 1 2
|
|
390
|
+
2 2 1 1 2
|
|
391
|
+
2 2 1 1 2
|
|
392
|
+
2 2 1 1 2
|
|
393
|
+
2 2 1 1 2
|
|
394
|
+
2 2 1 1 2
|
|
395
|
+
2 2 1 1 2
|
|
396
|
+
2 2 1 1 2
|
|
397
|
+
2 2 1 1 2
|
|
398
|
+
2 2 1 1 2
|
|
399
|
+
2 2 1 1 2
|
|
400
|
+
2 2 1 1 2
|
|
401
|
+
2 2 1 1 2
|
|
402
|
+
2 2 1 1 2
|
|
403
|
+
2 2 1 1 2
|
|
404
|
+
2 2 1 1 2
|
|
405
|
+
2 2 1 1 2
|
|
406
|
+
2 2 1 1 2
|
|
407
|
+
2 2 1 1 2
|
|
408
|
+
2 2 1 1 2
|
|
409
|
+
2 2 1 2 1
|
|
410
|
+
2 2 1 2 1
|
|
411
|
+
2 2 1 2 1
|
|
412
|
+
2 2 1 2 1
|
|
413
|
+
2 2 1 2 1
|
|
414
|
+
2 2 1 2 1
|
|
415
|
+
2 2 1 2 1
|
|
416
|
+
2 2 1 2 1
|
|
417
|
+
2 2 1 2 1
|
|
418
|
+
2 2 1 2 1
|
|
419
|
+
2 2 1 2 1
|
|
420
|
+
2 2 1 2 1
|
|
421
|
+
2 2 1 2 1
|
|
422
|
+
2 2 1 2 1
|
|
423
|
+
2 2 1 2 1
|
|
424
|
+
2 2 1 2 1
|
|
425
|
+
2 2 1 2 1
|
|
426
|
+
2 2 1 2 1
|
|
427
|
+
2 2 1 2 1
|
|
428
|
+
2 2 1 2 1
|
|
429
|
+
2 2 1 2 1
|
|
430
|
+
2 2 1 2 2
|
|
431
|
+
2 2 1 2 2
|
|
432
|
+
2 2 1 2 2
|
|
433
|
+
2 2 1 2 2
|
|
434
|
+
2 2 1 2 2
|
|
435
|
+
2 2 1 2 2
|
|
436
|
+
2 2 1 2 2
|
|
437
|
+
2 2 1 2 2
|
|
438
|
+
2 2 1 2 2
|
|
439
|
+
2 2 1 2 2
|
|
440
|
+
2 2 1 2 2
|
|
441
|
+
2 2 1 2 2
|
|
442
|
+
2 2 1 2 2
|
|
443
|
+
2 2 1 2 2
|
|
444
|
+
2 2 1 2 2
|
|
445
|
+
2 2 1 2 2
|
|
446
|
+
2 2 1 2 2
|
|
447
|
+
2 2 1 2 2
|
|
448
|
+
2 2 1 2 2
|
|
449
|
+
2 2 1 2 2
|
|
450
|
+
2 2 1 2 2
|
|
451
|
+
2 2 1 2 2
|
|
452
|
+
2 2 1 2 2
|
|
453
|
+
2 2 1 2 2
|
|
454
|
+
2 2 1 2 2
|
|
455
|
+
2 2 1 2 2
|
|
456
|
+
2 2 1 2 2
|
|
457
|
+
2 2 1 2 2
|
|
458
|
+
2 2 1 2 2
|
|
459
|
+
2 2 1 2 2
|
|
460
|
+
2 2 1 2 2
|
|
461
|
+
2 2 1 2 2
|
|
462
|
+
2 2 1 2 2
|
|
463
|
+
2 2 1 2 2
|
|
464
|
+
2 2 1 2 2
|
|
465
|
+
2 2 1 2 2
|
|
466
|
+
2 2 1 2 2
|
|
467
|
+
2 2 1 2 2
|
|
468
|
+
2 2 1 2 2
|
|
469
|
+
2 2 1 2 2
|
|
470
|
+
2 2 1 2 2
|
|
471
|
+
2 2 1 2 2
|
|
472
|
+
2 2 1 2 2
|
|
473
|
+
2 2 1 2 2
|
|
474
|
+
2 2 1 2 2
|
|
475
|
+
2 2 1 2 2
|
|
476
|
+
2 2 1 2 2
|
|
477
|
+
2 2 1 2 2
|
|
478
|
+
2 2 1 2 2
|
|
479
|
+
2 2 1 2 2
|
|
480
|
+
2 2 1 2 2
|
|
481
|
+
2 2 1 2 2
|
|
482
|
+
2 2 1 2 2
|
|
483
|
+
2 2 1 2 2
|
|
484
|
+
2 2 1 2 2
|
|
485
|
+
2 2 1 2 2
|
|
486
|
+
2 2 1 2 2
|
|
487
|
+
2 2 1 2 2
|
|
488
|
+
2 2 1 2 2
|
|
489
|
+
2 2 1 2 2
|
|
490
|
+
2 2 1 2 2
|
|
491
|
+
2 2 1 2 2
|
|
492
|
+
2 2 1 2 2
|
|
493
|
+
2 2 1 2 2
|
|
494
|
+
2 2 1 2 2
|
|
495
|
+
2 2 1 2 2
|
|
496
|
+
2 2 1 2 2
|
|
497
|
+
2 2 1 2 2
|
|
498
|
+
2 2 1 2 2
|
|
499
|
+
2 2 1 2 2
|
|
500
|
+
2 2 1 2 2
|
|
501
|
+
2 2 1 2 2
|
|
502
|
+
2 2 1 2 2
|
|
503
|
+
2 2 1 2 2
|
|
504
|
+
2 2 1 2 2
|
|
505
|
+
2 2 1 2 2
|
|
506
|
+
2 2 1 2 2
|
|
507
|
+
2 2 1 2 2
|
|
508
|
+
2 2 1 2 2
|
|
509
|
+
2 2 1 2 2
|
|
510
|
+
2 2 1 2 2
|
|
511
|
+
2 2 1 2 2
|
|
512
|
+
2 2 1 2 2
|
|
513
|
+
2 2 1 2 2
|
|
514
|
+
2 2 1 2 2
|
|
515
|
+
2 2 1 2 2
|
|
516
|
+
2 2 1 2 2
|
|
517
|
+
2 2 1 2 2
|
|
518
|
+
2 2 1 2 2
|
|
519
|
+
2 2 1 2 2
|
|
520
|
+
2 2 1 2 2
|
|
521
|
+
2 2 1 2 2
|
|
522
|
+
2 2 1 2 2
|
|
523
|
+
2 2 1 2 2
|
|
524
|
+
2 2 1 2 2
|
|
525
|
+
2 2 1 2 2
|
|
526
|
+
2 2 1 2 2
|
|
527
|
+
2 2 1 2 2
|
|
528
|
+
2 2 1 2 2
|
|
529
|
+
2 2 1 2 2
|
|
530
|
+
2 2 1 2 2
|
|
531
|
+
2 2 1 2 2
|
|
532
|
+
2 2 1 2 2
|
|
533
|
+
2 2 1 2 2
|
|
534
|
+
2 2 1 2 2
|
|
535
|
+
2 2 1 2 2
|
|
536
|
+
2 2 1 2 2
|
|
537
|
+
2 2 1 2 2
|
|
538
|
+
2 2 1 2 2
|
|
539
|
+
2 2 1 2 2
|
|
540
|
+
2 2 1 2 2
|
|
541
|
+
2 2 1 2 2
|
|
542
|
+
2 2 1 2 2
|
|
543
|
+
2 2 1 2 2
|
|
544
|
+
2 2 1 2 2
|
|
545
|
+
2 2 1 2 2
|
|
546
|
+
2 2 1 2 2
|
|
547
|
+
2 2 1 2 2
|
|
548
|
+
2 2 1 2 2
|
|
549
|
+
2 2 1 2 2
|
|
550
|
+
2 2 1 2 2
|
|
551
|
+
2 2 1 2 2
|
|
552
|
+
2 2 1 2 2
|
|
553
|
+
2 2 1 2 2
|
|
554
|
+
2 2 1 2 2
|
|
555
|
+
2 2 1 2 2
|
|
556
|
+
2 2 1 2 2
|
|
557
|
+
2 2 1 2 2
|
|
558
|
+
2 2 1 2 2
|
|
559
|
+
2 2 1 2 2
|
|
560
|
+
2 2 1 2 2
|
|
561
|
+
2 2 1 2 2
|
|
562
|
+
2 2 1 2 2
|
|
563
|
+
2 2 1 2 2
|
|
564
|
+
2 2 1 2 2
|
|
565
|
+
2 2 1 2 2
|
|
566
|
+
2 2 1 2 2
|
|
567
|
+
2 2 1 2 2
|
|
568
|
+
2 2 1 2 2
|
|
569
|
+
2 2 1 2 2
|
|
570
|
+
2 2 1 2 2
|
|
571
|
+
2 2 1 2 2
|
|
572
|
+
2 2 1 2 2
|
|
573
|
+
2 2 1 2 2
|
|
574
|
+
2 2 1 2 2
|
|
575
|
+
2 2 1 2 2
|
|
576
|
+
2 2 1 2 2
|
|
577
|
+
2 2 1 2 2
|
|
578
|
+
2 2 1 2 2
|
|
579
|
+
2 2 1 2 2
|
|
580
|
+
2 2 1 2 2
|
|
581
|
+
2 2 1 2 2
|
|
582
|
+
2 2 1 2 2
|
|
583
|
+
2 2 1 2 2
|
|
584
|
+
2 2 1 2 2
|
|
585
|
+
2 2 1 2 2
|
|
586
|
+
2 2 1 2 2
|
|
587
|
+
2 2 1 2 2
|
|
588
|
+
2 2 1 2 2
|
|
589
|
+
2 2 1 2 2
|
|
590
|
+
2 2 1 2 2
|
|
591
|
+
2 2 1 2 2
|
|
592
|
+
2 2 1 2 2
|
|
593
|
+
2 2 1 2 2
|
|
594
|
+
2 2 1 2 2
|
|
595
|
+
2 2 1 2 2
|
|
596
|
+
2 2 1 2 2
|
|
597
|
+
2 2 1 2 2
|
|
598
|
+
2 2 1 2 2
|
|
599
|
+
2 2 1 2 2
|
|
600
|
+
2 2 1 2 2
|
|
601
|
+
2 2 1 2 2
|
|
602
|
+
2 2 1 2 2
|
|
603
|
+
2 2 2 1 1
|
|
604
|
+
2 2 2 1 1
|
|
605
|
+
2 2 2 1 1
|
|
606
|
+
2 2 2 1 1
|
|
607
|
+
2 2 2 1 1
|
|
608
|
+
2 2 2 1 1
|
|
609
|
+
2 2 2 1 1
|
|
610
|
+
2 2 2 1 1
|
|
611
|
+
2 2 2 1 1
|
|
612
|
+
2 2 2 1 1
|
|
613
|
+
2 2 2 1 1
|
|
614
|
+
2 2 2 1 2
|
|
615
|
+
2 2 2 1 2
|
|
616
|
+
2 2 2 1 2
|
|
617
|
+
2 2 2 1 2
|
|
618
|
+
2 2 2 1 2
|
|
619
|
+
2 2 2 1 2
|
|
620
|
+
2 2 2 1 2
|
|
621
|
+
2 2 2 1 2
|
|
622
|
+
2 2 2 1 2
|
|
623
|
+
2 2 2 1 2
|
|
624
|
+
2 2 2 1 2
|
|
625
|
+
2 2 2 1 2
|
|
626
|
+
2 2 2 1 2
|
|
627
|
+
2 2 2 1 2
|
|
628
|
+
2 2 2 1 2
|
|
629
|
+
2 2 2 1 2
|
|
630
|
+
2 2 2 1 2
|
|
631
|
+
2 2 2 1 2
|
|
632
|
+
2 2 2 1 2
|
|
633
|
+
2 2 2 1 2
|
|
634
|
+
2 2 2 1 2
|
|
635
|
+
2 2 2 1 2
|
|
636
|
+
2 2 2 1 2
|
|
637
|
+
2 2 2 1 2
|
|
638
|
+
2 2 2 1 2
|
|
639
|
+
2 2 2 1 2
|
|
640
|
+
2 2 2 1 2
|
|
641
|
+
2 2 2 1 2
|
|
642
|
+
2 2 2 1 2
|
|
643
|
+
2 2 2 1 2
|
|
644
|
+
2 2 2 1 2
|
|
645
|
+
2 2 2 1 2
|
|
646
|
+
2 2 2 1 2
|
|
647
|
+
2 2 2 1 2
|
|
648
|
+
2 2 2 1 2
|
|
649
|
+
2 2 2 1 2
|
|
650
|
+
2 2 2 1 2
|
|
651
|
+
2 2 2 1 2
|
|
652
|
+
2 2 2 1 2
|
|
653
|
+
2 2 2 1 2
|
|
654
|
+
2 2 2 1 2
|
|
655
|
+
2 2 2 1 2
|
|
656
|
+
2 2 2 1 2
|
|
657
|
+
2 2 2 1 2
|
|
658
|
+
2 2 2 1 2
|
|
659
|
+
2 2 2 1 2
|
|
660
|
+
2 2 2 1 2
|
|
661
|
+
2 2 2 1 2
|
|
662
|
+
2 2 2 1 2
|
|
663
|
+
2 2 2 1 2
|
|
664
|
+
2 2 2 1 2
|
|
665
|
+
2 2 2 1 2
|
|
666
|
+
2 2 2 1 2
|
|
667
|
+
2 2 2 1 2
|
|
668
|
+
2 2 2 1 2
|
|
669
|
+
2 2 2 1 2
|
|
670
|
+
2 2 2 1 2
|
|
671
|
+
2 2 2 1 2
|
|
672
|
+
2 2 2 1 2
|
|
673
|
+
2 2 2 1 2
|
|
674
|
+
2 2 2 1 2
|
|
675
|
+
2 2 2 2 1
|
|
676
|
+
2 2 2 2 1
|
|
677
|
+
2 2 2 2 1
|
|
678
|
+
2 2 2 2 1
|
|
679
|
+
2 2 2 2 1
|
|
680
|
+
2 2 2 2 1
|
|
681
|
+
2 2 2 2 1
|
|
682
|
+
2 2 2 2 1
|
|
683
|
+
2 2 2 2 1
|
|
684
|
+
2 2 2 2 1
|
|
685
|
+
2 2 2 2 1
|
|
686
|
+
2 2 2 2 1
|
|
687
|
+
2 2 2 2 1
|
|
688
|
+
2 2 2 2 1
|
|
689
|
+
2 2 2 2 1
|
|
690
|
+
2 2 2 2 1
|
|
691
|
+
2 2 2 2 1
|
|
692
|
+
2 2 2 2 1
|
|
693
|
+
2 2 2 2 1
|
|
694
|
+
2 2 2 2 1
|
|
695
|
+
2 2 2 2 1
|
|
696
|
+
2 2 2 2 1
|
|
697
|
+
2 2 2 2 1
|
|
698
|
+
2 2 2 2 1
|
|
699
|
+
2 2 2 2 1
|
|
700
|
+
2 2 2 2 1
|
|
701
|
+
2 2 2 2 1
|
|
702
|
+
2 2 2 2 1
|
|
703
|
+
2 2 2 2 2
|
|
704
|
+
2 2 2 2 2
|
|
705
|
+
2 2 2 2 2
|
|
706
|
+
2 2 2 2 2
|
|
707
|
+
2 2 2 2 2
|
|
708
|
+
2 2 2 2 2
|
|
709
|
+
2 2 2 2 2
|
|
710
|
+
2 2 2 2 2
|
|
711
|
+
2 2 2 2 2
|
|
712
|
+
2 2 2 2 2
|
|
713
|
+
2 2 2 2 2
|
|
714
|
+
2 2 2 2 2
|
|
715
|
+
2 2 2 2 2
|
|
716
|
+
2 2 2 2 2
|
|
717
|
+
2 2 2 2 2
|
|
718
|
+
2 2 2 2 2
|
|
719
|
+
2 2 2 2 2
|
|
720
|
+
2 2 2 2 2
|
|
721
|
+
2 2 2 2 2
|
|
722
|
+
2 2 2 2 2
|
|
723
|
+
2 2 2 2 2
|
|
724
|
+
2 2 2 2 2
|
|
725
|
+
2 2 2 2 2
|
|
726
|
+
2 2 2 2 2
|
|
727
|
+
2 2 2 2 2
|
|
728
|
+
2 2 2 2 2
|
|
729
|
+
2 2 2 2 2
|
|
730
|
+
2 2 2 2 2
|
|
731
|
+
2 2 2 2 2
|
|
732
|
+
2 2 2 2 2
|
|
733
|
+
2 2 2 2 2
|
|
734
|
+
2 2 2 2 2
|
|
735
|
+
2 2 2 2 2
|
|
736
|
+
2 2 2 2 2
|
|
737
|
+
2 2 2 2 2
|
|
738
|
+
2 2 2 2 2
|
|
739
|
+
2 2 2 2 2
|
|
740
|
+
2 2 2 2 2
|
|
741
|
+
2 2 2 2 2
|
|
742
|
+
2 2 2 2 2
|
|
743
|
+
2 2 2 2 2
|
|
744
|
+
2 2 2 2 2
|
|
745
|
+
2 2 2 2 2
|
|
746
|
+
2 2 2 2 2
|
|
747
|
+
2 2 2 2 2
|
|
748
|
+
2 2 2 2 2
|
|
749
|
+
2 2 2 2 2
|
|
750
|
+
2 2 2 2 2
|
|
751
|
+
2 2 2 2 2
|
|
752
|
+
2 2 2 2 2
|
|
753
|
+
2 2 2 2 2
|
|
754
|
+
2 2 2 2 2
|
|
755
|
+
2 2 2 2 2
|
|
756
|
+
2 2 2 2 2
|
|
757
|
+
2 2 2 2 2
|
|
758
|
+
2 2 2 2 2
|
|
759
|
+
2 2 2 2 2
|
|
760
|
+
2 2 2 2 2
|
|
761
|
+
2 2 2 2 2
|
|
762
|
+
2 2 2 2 2
|
|
763
|
+
2 2 2 2 2
|
|
764
|
+
2 2 2 2 2
|
|
765
|
+
2 2 2 2 2
|
|
766
|
+
2 2 2 2 2
|
|
767
|
+
2 2 2 2 2
|
|
768
|
+
2 2 2 2 2
|
|
769
|
+
2 2 2 2 2
|
|
770
|
+
2 2 2 2 2
|
|
771
|
+
2 2 2 2 2
|
|
772
|
+
2 2 2 2 2
|
|
773
|
+
2 2 2 2 2
|
|
774
|
+
2 2 2 2 2
|
|
775
|
+
2 2 2 2 2
|
|
776
|
+
2 2 2 2 2
|
|
777
|
+
2 2 2 2 2
|
|
778
|
+
2 2 2 2 2
|
|
779
|
+
2 2 2 2 2
|
|
780
|
+
2 2 2 2 2
|
|
781
|
+
2 2 2 2 2
|
|
782
|
+
2 2 2 2 2
|
|
783
|
+
2 2 2 2 2
|
|
784
|
+
2 2 2 2 2
|
|
785
|
+
2 2 2 2 2
|
|
786
|
+
2 2 2 2 2
|
|
787
|
+
2 2 2 2 2
|
|
788
|
+
2 2 2 2 2
|
|
789
|
+
2 2 2 2 2
|
|
790
|
+
2 2 2 2 2
|
|
791
|
+
2 2 2 2 2
|
|
792
|
+
2 2 2 2 2
|
|
793
|
+
2 2 2 2 2
|
|
794
|
+
2 2 2 2 2
|
|
795
|
+
2 2 2 2 2
|
|
796
|
+
2 2 2 2 2
|
|
797
|
+
2 2 2 2 2
|
|
798
|
+
2 2 2 2 2
|
|
799
|
+
2 2 2 2 2
|
|
800
|
+
2 2 2 2 2
|
|
801
|
+
2 2 2 2 2
|
|
802
|
+
2 2 2 2 2
|
|
803
|
+
2 2 2 2 2
|
|
804
|
+
2 2 2 2 2
|
|
805
|
+
2 2 2 2 2
|
|
806
|
+
2 2 2 2 2
|
|
807
|
+
2 2 2 2 2
|
|
808
|
+
2 2 2 2 2
|
|
809
|
+
2 2 2 2 2
|
|
810
|
+
2 2 2 2 2
|
|
811
|
+
2 2 2 2 2
|
|
812
|
+
2 2 2 2 2
|
|
813
|
+
2 2 2 2 2
|
|
814
|
+
2 2 2 2 2
|
|
815
|
+
2 2 2 2 2
|
|
816
|
+
2 2 2 2 2
|
|
817
|
+
2 2 2 2 2
|
|
818
|
+
2 2 2 2 2
|
|
819
|
+
2 2 2 2 2
|
|
820
|
+
2 2 2 2 2
|
|
821
|
+
2 2 2 2 2
|
|
822
|
+
2 2 2 2 2
|
|
823
|
+
2 2 2 2 2
|
|
824
|
+
2 2 2 2 2
|
|
825
|
+
2 2 2 2 2
|
|
826
|
+
2 2 2 2 2
|
|
827
|
+
2 2 2 2 2
|
|
828
|
+
2 2 2 2 2
|
|
829
|
+
2 2 2 2 2
|
|
830
|
+
2 2 2 2 2
|
|
831
|
+
2 2 2 2 2
|
|
832
|
+
2 2 2 2 2
|
|
833
|
+
2 2 2 2 2
|
|
834
|
+
2 2 2 2 2
|
|
835
|
+
2 2 2 2 2
|
|
836
|
+
2 2 2 2 2
|
|
837
|
+
2 2 2 2 2
|
|
838
|
+
2 2 2 2 2
|
|
839
|
+
2 2 2 2 2
|
|
840
|
+
2 2 2 2 2
|
|
841
|
+
2 2 2 2 2
|
|
842
|
+
2 2 2 2 2
|
|
843
|
+
2 2 2 2 2
|
|
844
|
+
2 2 2 2 2
|
|
845
|
+
2 2 2 2 2
|
|
846
|
+
2 2 2 2 2
|
|
847
|
+
2 2 2 2 2
|
|
848
|
+
2 2 2 2 2
|
|
849
|
+
2 2 2 2 2
|
|
850
|
+
2 2 2 2 2
|
|
851
|
+
2 2 2 2 2
|
|
852
|
+
2 2 2 2 2
|
|
853
|
+
2 2 2 2 2
|
|
854
|
+
2 2 2 2 2
|
|
855
|
+
2 2 2 2 2
|
|
856
|
+
2 2 2 2 2
|
|
857
|
+
2 2 2 2 2
|
|
858
|
+
2 2 2 2 2
|
|
859
|
+
2 2 2 2 2
|
|
860
|
+
2 2 2 2 2
|
|
861
|
+
2 2 2 2 2
|
|
862
|
+
2 2 2 2 2
|
|
863
|
+
2 2 2 2 2
|
|
864
|
+
2 2 2 2 2
|
|
865
|
+
2 2 2 2 2
|
|
866
|
+
2 2 2 2 2
|
|
867
|
+
2 2 2 2 2
|
|
868
|
+
2 2 2 2 2
|
|
869
|
+
2 2 2 2 2
|
|
870
|
+
2 2 2 2 2
|
|
871
|
+
2 2 2 2 2
|
|
872
|
+
2 2 2 2 2
|
|
873
|
+
2 2 2 2 2
|
|
874
|
+
2 2 2 2 2
|
|
875
|
+
2 2 2 2 2
|
|
876
|
+
2 2 2 2 2
|
|
877
|
+
2 2 2 2 2
|
|
878
|
+
2 2 2 2 2
|
|
879
|
+
2 2 2 2 2
|
|
880
|
+
2 2 2 2 2
|
|
881
|
+
2 2 2 2 2
|
|
882
|
+
2 2 2 2 2
|
|
883
|
+
2 2 2 2 2
|
|
884
|
+
2 2 2 2 2
|
|
885
|
+
2 2 2 2 2
|
|
886
|
+
2 2 2 2 2
|
|
887
|
+
2 2 2 2 2
|
|
888
|
+
2 2 2 2 2
|
|
889
|
+
2 2 2 2 2
|
|
890
|
+
2 2 2 2 2
|
|
891
|
+
2 2 2 2 2
|
|
892
|
+
2 2 2 2 2
|
|
893
|
+
2 2 2 2 2
|
|
894
|
+
2 2 2 2 2
|
|
895
|
+
2 2 2 2 2
|
|
896
|
+
2 2 2 2 2
|
|
897
|
+
2 2 2 2 2
|
|
898
|
+
2 2 2 2 2
|
|
899
|
+
2 2 2 2 2
|
|
900
|
+
2 2 2 2 2
|
|
901
|
+
2 2 2 2 2
|
|
902
|
+
2 2 2 2 2
|
|
903
|
+
2 2 2 2 2
|
|
904
|
+
2 2 2 2 2
|
|
905
|
+
2 2 2 2 2
|
|
906
|
+
2 2 2 2 2
|
|
907
|
+
2 2 2 2 2
|
|
908
|
+
2 2 2 2 2
|
|
909
|
+
2 2 2 2 2
|
|
910
|
+
2 2 2 2 2
|
|
911
|
+
2 2 2 2 2
|
|
912
|
+
2 2 2 2 2
|
|
913
|
+
2 2 2 2 2
|
|
914
|
+
2 2 2 2 2
|
|
915
|
+
2 2 2 2 2
|
|
916
|
+
2 2 2 2 2
|
|
917
|
+
2 2 2 2 2
|
|
918
|
+
2 2 2 2 2
|
|
919
|
+
2 2 2 2 2
|
|
920
|
+
2 2 2 2 2
|
|
921
|
+
2 2 2 2 2
|
|
922
|
+
2 2 2 2 2
|
|
923
|
+
2 2 2 2 2
|
|
924
|
+
2 2 2 2 2
|
|
925
|
+
2 2 2 2 2
|
|
926
|
+
2 2 2 2 2
|
|
927
|
+
2 2 2 2 2
|
|
928
|
+
2 2 2 2 2
|
|
929
|
+
2 2 2 2 2
|
|
930
|
+
2 2 2 2 2
|
|
931
|
+
2 2 2 2 2
|
|
932
|
+
2 2 2 2 2
|
|
933
|
+
2 2 2 2 2
|
|
934
|
+
2 2 2 2 2
|
|
935
|
+
2 2 2 2 2
|
|
936
|
+
2 2 2 2 2
|
|
937
|
+
2 2 2 2 2
|
|
938
|
+
2 2 2 2 2
|
|
939
|
+
2 2 2 2 2
|
|
940
|
+
2 2 2 2 2
|
|
941
|
+
2 2 2 2 2
|
|
942
|
+
2 2 2 2 2
|
|
943
|
+
2 2 2 2 2
|
|
944
|
+
2 2 2 2 2
|
|
945
|
+
2 2 2 2 2
|
|
946
|
+
2 2 2 2 2
|
|
947
|
+
2 2 2 2 2
|
|
948
|
+
2 2 2 2 2
|
|
949
|
+
2 2 2 2 2
|
|
950
|
+
2 2 2 2 2
|
|
951
|
+
2 2 2 2 2
|
|
952
|
+
2 2 2 2 2
|
|
953
|
+
2 2 2 2 2
|
|
954
|
+
2 2 2 2 2
|
|
955
|
+
2 2 2 2 2
|
|
956
|
+
2 2 2 2 2
|
|
957
|
+
2 2 2 2 2
|
|
958
|
+
2 2 2 2 2
|
|
959
|
+
2 2 2 2 2
|
|
960
|
+
2 2 2 2 2
|
|
961
|
+
2 2 2 2 2
|
|
962
|
+
2 2 2 2 2
|
|
963
|
+
2 2 2 2 2
|
|
964
|
+
2 2 2 2 2
|
|
965
|
+
2 2 2 2 2
|
|
966
|
+
2 2 2 2 2
|
|
967
|
+
2 2 2 2 2
|
|
968
|
+
2 2 2 2 2
|
|
969
|
+
2 2 2 2 2
|
|
970
|
+
2 2 2 2 2
|
|
971
|
+
2 2 2 2 2
|
|
972
|
+
2 2 2 2 2
|
|
973
|
+
2 2 2 2 2
|
|
974
|
+
2 2 2 2 2
|
|
975
|
+
2 2 2 2 2
|
|
976
|
+
2 2 2 2 2
|
|
977
|
+
2 2 2 2 2
|
|
978
|
+
2 2 2 2 2
|
|
979
|
+
2 2 2 2 2
|
|
980
|
+
2 2 2 2 2
|
|
981
|
+
2 2 2 2 2
|
|
982
|
+
2 2 2 2 2
|
|
983
|
+
2 2 2 2 2
|
|
984
|
+
2 2 2 2 2
|
|
985
|
+
2 2 2 2 2
|
|
986
|
+
2 2 2 2 2
|
|
987
|
+
2 2 2 2 2
|
|
988
|
+
2 2 2 2 2
|
|
989
|
+
2 2 2 2 2
|
|
990
|
+
2 2 2 2 2
|
|
991
|
+
2 2 2 2 2
|
|
992
|
+
2 2 2 2 2
|
|
993
|
+
2 2 2 2 2
|
|
994
|
+
2 2 2 2 2
|
|
995
|
+
2 2 2 2 2
|
|
996
|
+
2 2 2 2 2
|
|
997
|
+
2 2 2 2 2
|
|
998
|
+
2 2 2 2 2
|
|
999
|
+
2 2 2 2 2
|
|
1000
|
+
2 2 2 2 2
|
|
1001
|
+
|
|
@@ -0,0 +1,68 @@
|
|
|
1
|
+
$:.unshift(File.dirname(__FILE__)+"/../../")
|
|
2
|
+
require 'spec_helper'
|
|
3
|
+
describe "Statsample::Bivariate polychoric extension" do
|
|
4
|
+
it "should respond to polychoric method" do
|
|
5
|
+
Statsample::Bivariate.should respond_to(:polychoric)
|
|
6
|
+
end
|
|
7
|
+
it "should respond to method polychoric_correlation_matrix" do
|
|
8
|
+
a=([1,1,2,2,2,3,3,3,2,2,3,3,3]*4).to_scale
|
|
9
|
+
b=([1,2,2,2,1,3,2,3,2,2,3,3,2]*4).to_scale
|
|
10
|
+
c=([1,1,1,2,2,2,2,3,2,3,2,2,3]*4).to_scale
|
|
11
|
+
ds={'a'=>a,'b'=>b,'c'=>c}.to_dataset
|
|
12
|
+
Statsample::Bivariate.polychoric_correlation_matrix(ds).should be_instance_of(::Matrix)
|
|
13
|
+
end
|
|
14
|
+
end
|
|
15
|
+
|
|
16
|
+
describe Statsample::Bivariate::Polychoric do
|
|
17
|
+
before do
|
|
18
|
+
matrix=Matrix[[58,52,1],[26,58,3],[8,12,9]]
|
|
19
|
+
@poly=Statsample::Bivariate::Polychoric.new(matrix)
|
|
20
|
+
end
|
|
21
|
+
it "should have summary.size > 0" do
|
|
22
|
+
@poly.summary.size.should>0
|
|
23
|
+
end
|
|
24
|
+
def check_two_step
|
|
25
|
+
@poly.r.should be_close(0.420, 0.001)
|
|
26
|
+
@poly.threshold_y[0].should be_close(-0.240 ,0.001)
|
|
27
|
+
@poly.threshold_x[0].should be_close(-0.027 ,0.001)
|
|
28
|
+
@poly.threshold_y[1].should be_close(1.578 ,0.001)
|
|
29
|
+
@poly.threshold_x[1].should be_close(1.137 ,0.001)
|
|
30
|
+
end
|
|
31
|
+
it "should compute two step mle with ruby" do
|
|
32
|
+
@poly.compute_two_step_mle_drasgow_ruby
|
|
33
|
+
check_two_step
|
|
34
|
+
end
|
|
35
|
+
if Statsample.has_gsl?
|
|
36
|
+
it "compute two-step with gsl" do
|
|
37
|
+
@poly.compute_two_step_mle_drasgow_gsl
|
|
38
|
+
check_two_step
|
|
39
|
+
end
|
|
40
|
+
it "compute polychoric series using gsl" do
|
|
41
|
+
@poly.method=:polychoric_series
|
|
42
|
+
@poly.compute
|
|
43
|
+
|
|
44
|
+
@poly.r.should be_close(0.556, 0.001)
|
|
45
|
+
@poly.threshold_y[0].should be_close(-0.240 ,0.001)
|
|
46
|
+
@poly.threshold_x[0].should be_close(-0.027 ,0.001)
|
|
47
|
+
@poly.threshold_y[1].should be_close(1.578 ,0.001)
|
|
48
|
+
@poly.threshold_x[1].should be_close(1.137 ,0.001)
|
|
49
|
+
end
|
|
50
|
+
it "compute joint estimation (without derivative) using gsl" do
|
|
51
|
+
@poly.method=:joint
|
|
52
|
+
@poly.compute
|
|
53
|
+
@poly.method.should==:joint
|
|
54
|
+
@poly.r.should be_close(0.4192, 0.0001)
|
|
55
|
+
@poly.threshold_y[0].should be_close(-0.2421, 0.0001)
|
|
56
|
+
@poly.threshold_x[0].should be_close(-0.0297, 0.0001)
|
|
57
|
+
@poly.threshold_y[1].should be_close(1.5938 ,0.0001)
|
|
58
|
+
@poly.threshold_x[1].should be_close(1.1331, 0.0001)
|
|
59
|
+
end
|
|
60
|
+
else
|
|
61
|
+
it "compute two-step with gsl requires rb-gsl"
|
|
62
|
+
it "compute polychoric series requires rb-gsl"
|
|
63
|
+
it "compute joint estimation requires rb-gsl"
|
|
64
|
+
end
|
|
65
|
+
|
|
66
|
+
|
|
67
|
+
|
|
68
|
+
end
|
|
@@ -0,0 +1,94 @@
|
|
|
1
|
+
$:.unshift(File.dirname(__FILE__)+"/../../")
|
|
2
|
+
require 'spec_helper'
|
|
3
|
+
|
|
4
|
+
describe "Statsample::Bivariate tetrachoric extensions" do
|
|
5
|
+
it "should respond to tetrachoric method" do
|
|
6
|
+
Statsample::Bivariate.should respond_to(:tetrachoric)
|
|
7
|
+
end
|
|
8
|
+
it "should return correct tetrachoric_matrix"do
|
|
9
|
+
ds=Statsample::PlainText.read(File.dirname(__FILE__)+"/../../../data/tetmat_test.txt", %w{a b c d e})
|
|
10
|
+
tcm_obs=Statsample::Bivariate.tetrachoric_correlation_matrix(ds)
|
|
11
|
+
tcm_exp=Statsample::PlainText.read(File.dirname(__FILE__)+"/../../../data/tetmat_matrix.txt", %w{a b c d e}).to_matrix
|
|
12
|
+
tcm_obs.row_size.times do |i|
|
|
13
|
+
tcm_obs.column_size do |j|
|
|
14
|
+
tcm_obs[i,j].should be_close(tcm_exp[i,k], 0.00001)
|
|
15
|
+
end
|
|
16
|
+
end
|
|
17
|
+
end
|
|
18
|
+
|
|
19
|
+
end
|
|
20
|
+
|
|
21
|
+
describe Statsample::Bivariate::Tetrachoric do
|
|
22
|
+
context "Polychoric 2x2 vs tetrachoric" do
|
|
23
|
+
before do
|
|
24
|
+
@matrix=Matrix[[150+rand(10),1000+rand(20)],[1000+rand(20),200+rand(20)]]
|
|
25
|
+
@tetra = Statsample::Bivariate::Tetrachoric.new_with_matrix(@matrix)
|
|
26
|
+
@poly = Statsample::Bivariate::Polychoric.new(@matrix)
|
|
27
|
+
end
|
|
28
|
+
it "should return similar values for two step ruby" do
|
|
29
|
+
@poly.compute_two_step_mle_drasgow_ruby
|
|
30
|
+
@tetra.r.should be_close(@poly.r,0.0001)
|
|
31
|
+
end
|
|
32
|
+
if Statsample.has_gsl?
|
|
33
|
+
it "should return similar values for two step using gsl" do
|
|
34
|
+
@poly.compute_two_step_mle_drasgow_gsl
|
|
35
|
+
@tetra.r.should be_close(@poly.r,0.0001)
|
|
36
|
+
end
|
|
37
|
+
else
|
|
38
|
+
it "shouldn't use two step gsl without rb-gsl"
|
|
39
|
+
end
|
|
40
|
+
end
|
|
41
|
+
|
|
42
|
+
|
|
43
|
+
it "should raise error on contingence table without cases" do
|
|
44
|
+
a,b,c,d=0,0,0,0
|
|
45
|
+
|
|
46
|
+
lambda {Statsample::Bivariate::Tetrachoric.new(a,b,c,d)}.should raise_error(RuntimeError)
|
|
47
|
+
end
|
|
48
|
+
it "should raise error on contingence table without cases on a row" do
|
|
49
|
+
|
|
50
|
+
a,b,c,d=10,10,0,0
|
|
51
|
+
|
|
52
|
+
lambda {Statsample::Bivariate::Tetrachoric.new(a,b,c,d)}.should raise_error(RuntimeError)
|
|
53
|
+
end
|
|
54
|
+
it "should raise error on contingence table without cases on a column" do
|
|
55
|
+
a,b,c,d=10,0,10,0
|
|
56
|
+
lambda {Statsample::Bivariate::Tetrachoric.new(a,b,c,d)}.should raise_error(RuntimeError)
|
|
57
|
+
end
|
|
58
|
+
it "should return correct values for perfect correlation" do
|
|
59
|
+
a,b,c,d=10,0,0,10
|
|
60
|
+
tc = Statsample::Bivariate::Tetrachoric.new(a,b,c,d)
|
|
61
|
+
tc.r.should==1
|
|
62
|
+
tc.se.should==0
|
|
63
|
+
end
|
|
64
|
+
it "should return correct values for perfect inverse correlation" do
|
|
65
|
+
a,b,c,d=0,10,10,0
|
|
66
|
+
tc = Statsample::Bivariate::Tetrachoric.new(a,b,c,d)
|
|
67
|
+
tc.r.should==-1
|
|
68
|
+
tc.se.should==0
|
|
69
|
+
end
|
|
70
|
+
|
|
71
|
+
it "should return correct value for standard contingence table" do
|
|
72
|
+
a,b,c,d = 30,40,70,20
|
|
73
|
+
tc = Statsample::Bivariate::Tetrachoric.new(a,b,c,d)
|
|
74
|
+
tc.r.should be_close(-0.53980,0.0001)
|
|
75
|
+
tc.se.should be_close(0.09940,0.0001)
|
|
76
|
+
tc.threshold_x.should be_close(-0.15731, 0.0001)
|
|
77
|
+
tc.threshold_y.should be_close( 0.31864, 0.0001)
|
|
78
|
+
end
|
|
79
|
+
it "should return equal values for dataset and crosstab inputs" do
|
|
80
|
+
x=%w{a a a a b b b a b b a a b b}.to_vector
|
|
81
|
+
y=%w{0 0 1 1 0 0 1 1 1 1 0 0 1 1}.to_vector
|
|
82
|
+
# crosstab
|
|
83
|
+
# 0 1
|
|
84
|
+
# a 4 3
|
|
85
|
+
# b 2 5
|
|
86
|
+
a,b,c,d=4,3,2,5
|
|
87
|
+
tc1 = Statsample::Bivariate::Tetrachoric.new(a,b,c,d)
|
|
88
|
+
tc2 = Statsample::Bivariate::Tetrachoric.new_with_vectors(x,y)
|
|
89
|
+
tc1.r.should==tc2.r
|
|
90
|
+
tc1.se.should==tc2.se
|
|
91
|
+
tc2.summary.size.should>0
|
|
92
|
+
end
|
|
93
|
+
|
|
94
|
+
end
|
data.tar.gz.sig
CHANGED
|
Binary file
|
metadata
CHANGED
|
@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
|
|
|
5
5
|
segments:
|
|
6
6
|
- 0
|
|
7
7
|
- 13
|
|
8
|
-
-
|
|
9
|
-
version: 0.13.
|
|
8
|
+
- 1
|
|
9
|
+
version: 0.13.1
|
|
10
10
|
platform: ruby
|
|
11
11
|
authors:
|
|
12
12
|
- Claudio Bustos
|
|
@@ -99,9 +99,14 @@ files:
|
|
|
99
99
|
- Manifest.txt
|
|
100
100
|
- README.txt
|
|
101
101
|
- Rakefile
|
|
102
|
+
- data/tetmat_matrix.txt
|
|
103
|
+
- data/tetmat_test.txt
|
|
104
|
+
- lib/statsample/bivariate/extension_version.rb
|
|
102
105
|
- lib/statsample/bivariate/polychoric.rb
|
|
103
106
|
- lib/statsample/bivariate/tetrachoric.rb
|
|
104
107
|
- spec/spec_helper.rb
|
|
108
|
+
- spec/statsample/bivariate/polychoric_spec.rb
|
|
109
|
+
- spec/statsample/bivariate/tetrachoric_spec.rb
|
|
105
110
|
has_rdoc: true
|
|
106
111
|
homepage: http://ruby-statsample.rubyforge.org/
|
|
107
112
|
licenses: []
|
metadata.gz.sig
CHANGED
|
@@ -1 +1,2 @@
|
|
|
1
|
-
|
|
1
|
+
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|
|
2
|
+
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|