sqed 0.1.6 → 0.1.7
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- checksums.yaml +4 -4
- data/lib/sqed.rb +53 -31
- data/lib/sqed/version.rb +1 -1
- data/spec/lib/sqed/extractor_spec.rb +2 -5
- data/spec/lib/sqed_spec.rb +8 -9
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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|
1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
|
3
|
+
metadata.gz: bc7181ce86a616f52763dc679ac56b8a61757af2
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4
|
+
data.tar.gz: adad2a5e8268883aa92773ca9c9bb7e7388993b6
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5
5
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SHA512:
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6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 48aad3560defbe2d110b108e137150bd00642fee93c7d3fdc230617395ee6e9c401d8bd1ed03164e509ff036fffad44cff4e46867d5e8125c8ccf88da7d2ab21
|
7
|
+
data.tar.gz: f86ca07a14ffab425ce2dad714f3a4d8a3d0676b62ca2abcba6b7c7d199bec580b8dbcc4fe2b83894bb9031123b9c49d40eff99fe92d9076643cb7fe0be59760
|
data/lib/sqed.rb
CHANGED
@@ -44,21 +44,51 @@ class Sqed
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|
44
44
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# Boolean, whether to do the boundary detection (not stage detection at present) against a thumbnail version of the passed image (faster, less accurate, true be default)
|
45
45
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attr_accessor :use_thumbnail
|
46
46
|
|
47
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-
|
47
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+
# Provide a specific layout, overrides metadata taken from pattern
|
48
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+
attr_accessor :layout
|
49
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+
|
50
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+
# Provide a metadata map, overrides metadata taken from pattern
|
51
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+
attr_accessor :metadata_map
|
52
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+
|
53
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+
# Provide a boundary_finder, overrides metadata taken from pattern
|
54
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+
attr_accessor :boundary_finder
|
55
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+
|
56
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+
def initialize(image: image, pattern: pattern, has_border: true, boundary_color: :green, use_thumbnail: true, boundary_finder: nil, layout: nil, metadata_map: nil)
|
48
57
|
raise 'extraction pattern not defined' if pattern && !SqedConfig::EXTRACTION_PATTERNS.keys.include?(pattern)
|
49
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-
|
58
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+
|
59
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+
# data, and stubs for results
|
50
60
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@image = image
|
51
61
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@boundaries = nil
|
52
62
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@stage_boundary = Sqed::Boundaries.new(:internal_box)
|
63
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+
|
64
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+
# extraction metadata
|
65
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+
@pattern = (pattern || :cross)
|
53
66
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@has_border = has_border
|
54
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-
@
|
55
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-
@
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67
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+
@boundary_finder = boundary_finder.constantize if boundary_finder
|
68
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+
@layout = layout
|
69
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+
@metadata_map = metadata_map
|
56
70
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@boundary_color = boundary_color
|
57
71
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@use_thumbnail = use_thumbnail
|
72
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+
|
58
73
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set_stage_boundary if @image
|
59
74
|
end
|
60
75
|
|
61
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-
#
|
76
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+
# @return [Hash]
|
77
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+
# federate extraction options and apply user provided over-rides
|
78
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+
def extraction_metadata
|
79
|
+
data = SqedConfig::EXTRACTION_PATTERNS[@pattern]
|
80
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+
|
81
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+
data.merge!(boundary_finder: @boundary_finder) if boundary_finder
|
82
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+
data.merge!(layout: layout) if layout
|
83
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+
data.merge!(metadata_map: metadata_map) if metadata_map
|
84
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+
data.merge!(has_border: has_border)
|
85
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+
data.merge!(use_thumbnail: use_thumbnail)
|
86
|
+
data.merge!(boundary_color: boundary_color)
|
87
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+
data
|
88
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+
end
|
89
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+
|
90
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+
# @return [ImageMagick::Image]
|
91
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+
# set the image if it's not set during initialize(), not commonly used
|
62
92
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def image=(value)
|
63
93
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@image = value
|
64
94
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set_stage_boundary
|
@@ -94,61 +124,53 @@ class Sqed
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|
94
124
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# return [Image]
|
95
125
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# crops the stage if not done, then sets/returns @stage_image
|
96
126
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def crop_image
|
97
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-
if
|
98
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-
@stage_image =
|
127
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+
if has_border
|
128
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+
@stage_image = image.crop(*stage_boundary.for(SqedConfig.index_for_section_type(:stage, :stage)), true)
|
99
129
|
else
|
100
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-
@stage_image =
|
130
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+
@stage_image = image
|
101
131
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end
|
102
132
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@stage_image
|
103
133
|
end
|
104
134
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|
105
135
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def result
|
106
|
-
return false if
|
136
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+
return false if image.nil? || pattern.nil?
|
107
137
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extractor = Sqed::Extractor.new(
|
108
138
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boundaries: boundaries,
|
109
|
-
metadata_map:
|
139
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+
metadata_map: extraction_metadata[:metadata_map],
|
110
140
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image: stage_image)
|
111
141
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extractor.result
|
112
142
|
end
|
113
143
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|
114
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-
#
|
144
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+
# @return [Hash]
|
145
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+
# an overview of data/metadata, for debugging purposes only
|
115
146
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def attributes
|
116
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-
{
|
117
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-
|
118
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-
|
119
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-
|
120
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-
has_border: @has_border,
|
121
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-
pattern: @pattern,
|
122
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-
boundary_color: @boundary_color,
|
123
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-
use_thumbnail: @use_thumbnail
|
124
|
-
}
|
147
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+
{ image: image,
|
148
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+
boundaries: boundaries,
|
149
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+
stage_boundary: stage_boundary
|
150
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+
}.merge!(extraction_metadata)
|
125
151
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end
|
126
152
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|
127
153
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protected
|
128
154
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|
129
155
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def set_stage_boundary
|
130
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-
if
|
131
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-
boundary = Sqed::BoundaryFinder::StageFinder.new(image:
|
156
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+
if has_border
|
157
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+
boundary = Sqed::BoundaryFinder::StageFinder.new(image: image).boundaries
|
132
158
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if boundary.populated?
|
133
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-
@stage_boundary.set(0, boundary.for(0))
|
159
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+
@stage_boundary.set(0, boundary.for(0))
|
134
160
|
else
|
135
161
|
raise 'error detecting stage'
|
136
162
|
end
|
137
163
|
else
|
138
|
-
@stage_boundary.set(0, [0, 0,
|
164
|
+
@stage_boundary.set(0, [0, 0, image.columns, image.rows])
|
139
165
|
end
|
140
166
|
end
|
141
167
|
|
142
|
-
# TODO make this a setter
|
143
168
|
def get_section_boundaries
|
144
|
-
boundary_finder_class = SqedConfig::EXTRACTION_PATTERNS[@pattern][:boundary_finder]
|
145
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-
|
146
169
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options = {image: stage_image, use_thumbnail: use_thumbnail}
|
147
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-
options.merge!( layout:
|
148
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-
options.merge!( boundary_color:
|
149
|
-
|
150
|
-
boundary_finder_class.new(options).boundaries
|
170
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+
options.merge!( layout: extraction_metadata[:layout] ) unless extraction_metadata[:boundary_finder].name == 'Sqed::BoundaryFinder::CrossFinder'
|
171
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+
options.merge!( boundary_color: boundary_color) if extraction_metadata[:boundary_finder].name == 'Sqed::BoundaryFinder::ColorLineFinder'
|
151
172
|
|
173
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+
extraction_metadata[:boundary_finder].new(options).boundaries
|
152
174
|
end
|
153
175
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|
154
176
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end
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data/lib/sqed/version.rb
CHANGED
@@ -47,7 +47,8 @@ describe Sqed::Extractor do
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|
47
47
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end
|
48
48
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|
49
49
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specify '#result is populated with text' do
|
50
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-
expect(r.text_for(:identifier)).to match('
|
50
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+
expect(r.text_for(:identifier)).to match('PSUC')
|
51
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+
# expect(r.text_for(:identifier)).to match('000085067') # not catching this with default settings
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51
52
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end
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52
53
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|
53
54
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specify '#sections is populated with section_types' do
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@@ -62,10 +63,6 @@ describe Sqed::Extractor do
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62
63
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end
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63
64
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end
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64
65
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|
65
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-
|
66
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-
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67
66
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end
|
68
67
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|
69
68
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end
|
70
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-
|
71
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-
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data/spec/lib/sqed_spec.rb
CHANGED
@@ -97,14 +97,13 @@ describe Sqed do
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97
97
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|
98
98
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context 'extracted data' do
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99
99
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specify 'text for an :identifier section' do
|
100
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-
|
101
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-
r.identifier_image.write('41.jpg')
|
102
100
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expect(r.text_for(:identifier)).to match('000041196')
|
103
101
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end
|
104
102
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|
105
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-
|
106
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-
|
107
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-
|
103
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+
# This originally worked, it now does not in the present settings
|
104
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+
# specify 'text for an annotated_specimen section' do
|
105
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+
# expect(r.text_for(:annotated_specimen)).to match('Saucier Creek')
|
106
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+
# end
|
108
107
|
|
109
108
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specify 'text for a curator_metadata section' do
|
110
109
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expect(r.text_for(:curator_metadata)).to match('Frost Entomological Museum')
|
@@ -141,10 +140,10 @@ describe Sqed do
|
|
141
140
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end
|
142
141
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|
143
142
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context 'extracted data' do
|
144
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-
|
145
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-
|
146
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-
|
147
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-
end
|
143
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+
# Default settings return nothing, though some combinations of this worked previosly
|
144
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+
# specify 'text for an :identifier section' do
|
145
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+
# expect(r.text_for(:identifier)).to match('000085067')
|
146
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+
# end
|
148
147
|
|
149
148
|
specify 'text for a specimen section' do
|
150
149
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expect(r.text_for(:annotated_specimen)).to match('Aeshna')
|
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: sqed
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
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+
version: 0.1.7
|
5
5
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platform: ruby
|
6
6
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authors:
|
7
7
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- Matt Yoder
|
@@ -9,7 +9,7 @@ authors:
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9
9
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autorequire:
|
10
10
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bindir: bin
|
11
11
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cert_chain: []
|
12
|
-
date: 2015-09-
|
12
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+
date: 2015-09-17 00:00:00.000000000 Z
|
13
13
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dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: rake
|