snp-search 2.10.2 → 2.10.7

data/VERSION

@@ -1 +1 @@
-2.10.2
+2.10.7

data/lib/output_information_methods.rb

@@ -19,7 +19,7 @@ def output_information_methods(snps, outfile, cuttoff_genotype, cuttoff_snp, inf
       snp.alleles.each do |allele|
         next if snp.alleles.any?{|allele| allele.base.length > 1} # indel
         if allele.id != snp.reference_allele_id
-          snps_counter += 1
+          
           # get annotation (if there is any) for each SNP
           features = Feature.joins(:snps).where("snps.id = ?", snp.id)
           
@@ -37,7 +37,7 @@ def output_information_methods(snps, outfile, cuttoff_genotype, cuttoff_snp, inf
           ref_base = Bio::Sequence.auto(Allele.find(snp.reference_allele_id).base)
           snp_base = Bio::Sequence.auto(allele.base)
           # count snps now: after you have selected the snps with gqs and snp_qual greater than the threshold.
-          
+          snps_counter += 1
           # If the feature is empty then just output basic information about the snp.
 
           if features.empty?

data/snp-search.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "snp-search"
-  s.version = "2.10.2"
+  s.version = "2.10.7"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Ali Al-Shahib", "Anthony Underwood"]

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: snp-search
 version: !ruby/object:Gem::Version
-  version: 2.10.2
+  version: 2.10.7
   prerelease: 
 platform: ruby
 authors:
@@ -227,7 +227,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -4259340875047454544
+      hash: 323554498078972222
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: