snp-search 0.19.0 → 0.21.0

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Files changed (6) hide show
  1. data/Gemfile +1 -0
  2. data/Gemfile.lock +2 -0
  3. data/README.rdoc +1 -1
  4. data/VERSION +1 -1
  5. data/snp-search.gemspec +5 -2
  6. metadata +28 -17
data/Gemfile CHANGED
@@ -6,6 +6,7 @@ source "http://rubygems.org"
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  gem "activerecord", "~> 3.1.3"
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  gem "bio", "~> 1.4.2"
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  gem "slop", "~> 2.4.0"
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+ gem 'sqlite3', "~> 1.3.4"
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  # Add dependencies to develop your gem here.
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  # Include everything needed to run rake, tests, features, etc.
data/Gemfile.lock CHANGED
@@ -34,6 +34,7 @@ GEM
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  diff-lcs (~> 1.1.2)
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  rspec-mocks (2.3.0)
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  slop (2.4.0)
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+ sqlite3 (1.3.4)
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  tzinfo (0.3.31)
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  PLATFORMS
@@ -47,3 +48,4 @@ DEPENDENCIES
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  rcov
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  rspec (~> 2.3.0)
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  slop (~> 2.4.0)
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+ sqlite3 (~> 1.3.4)
data/README.rdoc CHANGED
@@ -64,7 +64,7 @@ Usage:
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  ruby example1.rb -d your_db_name.sqlite3 -s list_of_your_species.txt -o output.fasta
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- *Example2: This script queries the database and selects the number of unique SNPs within the list of the strains/samples provided. The output is the number of unique SNPs.
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+ * Example2: This script queries the database and selects the number of unique SNPs within the list of the strains/samples provided. The output is the number of unique SNPs.
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  Usage:
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data/VERSION CHANGED
@@ -1 +1 @@
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- 0.19.0
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+ 0.21.0
data/snp-search.gemspec CHANGED
@@ -5,11 +5,11 @@
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  Gem::Specification.new do |s|
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  s.name = "snp-search"
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- s.version = "0.19.0"
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+ s.version = "0.21.0"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Ali Al-Shahib", "Anthony Underwood"]
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- s.date = "2011-12-06"
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+ s.date = "2011-12-07"
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  s.description = "Use the snp-search toolset to query the SNP database"
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  s.email = "ali.al-shahib@hpa.org.uk"
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  s.executables = ["snp-search"]
@@ -51,6 +51,7 @@ Gem::Specification.new do |s|
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  s.add_runtime_dependency(%q<activerecord>, ["~> 3.1.3"])
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  s.add_runtime_dependency(%q<bio>, ["~> 1.4.2"])
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  s.add_runtime_dependency(%q<slop>, ["~> 2.4.0"])
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+ s.add_runtime_dependency(%q<sqlite3>, ["~> 1.3.4"])
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  s.add_development_dependency(%q<rspec>, ["~> 2.3.0"])
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  s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
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  s.add_development_dependency(%q<jeweler>, ["~> 1.6.4"])
@@ -59,6 +60,7 @@ Gem::Specification.new do |s|
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  s.add_dependency(%q<activerecord>, ["~> 3.1.3"])
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  s.add_dependency(%q<bio>, ["~> 1.4.2"])
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  s.add_dependency(%q<slop>, ["~> 2.4.0"])
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+ s.add_dependency(%q<sqlite3>, ["~> 1.3.4"])
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  s.add_dependency(%q<rspec>, ["~> 2.3.0"])
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  s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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  s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
@@ -68,6 +70,7 @@ Gem::Specification.new do |s|
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  s.add_dependency(%q<activerecord>, ["~> 3.1.3"])
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  s.add_dependency(%q<bio>, ["~> 1.4.2"])
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  s.add_dependency(%q<slop>, ["~> 2.4.0"])
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+ s.add_dependency(%q<sqlite3>, ["~> 1.3.4"])
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  s.add_dependency(%q<rspec>, ["~> 2.3.0"])
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  s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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  s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: snp-search
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  version: !ruby/object:Gem::Version
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- version: 0.19.0
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+ version: 0.21.0
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  prerelease:
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  platform: ruby
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  authors:
@@ -10,11 +10,11 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2011-12-06 00:00:00.000000000Z
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+ date: 2011-12-07 00:00:00.000000000Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: activerecord
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- requirement: &2158876860 !ruby/object:Gem::Requirement
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+ requirement: &2158662860 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -22,10 +22,10 @@ dependencies:
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  version: 3.1.3
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  type: :runtime
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  prerelease: false
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- version_requirements: *2158876860
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+ version_requirements: *2158662860
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  - !ruby/object:Gem::Dependency
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  name: bio
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- requirement: &2158876360 !ruby/object:Gem::Requirement
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+ requirement: &2158662200 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -33,10 +33,10 @@ dependencies:
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  version: 1.4.2
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  type: :runtime
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  prerelease: false
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- version_requirements: *2158876360
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+ version_requirements: *2158662200
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  - !ruby/object:Gem::Dependency
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  name: slop
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- requirement: &2158875880 !ruby/object:Gem::Requirement
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+ requirement: &2158661540 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -44,10 +44,21 @@ dependencies:
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  version: 2.4.0
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  type: :runtime
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  prerelease: false
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- version_requirements: *2158875880
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+ version_requirements: *2158661540
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+ - !ruby/object:Gem::Dependency
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+ name: sqlite3
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+ requirement: &2158660960 !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 1.3.4
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: *2158660960
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  - !ruby/object:Gem::Dependency
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  name: rspec
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- requirement: &2158875340 !ruby/object:Gem::Requirement
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+ requirement: &2158660360 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -55,10 +66,10 @@ dependencies:
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  version: 2.3.0
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  type: :development
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  prerelease: false
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- version_requirements: *2158875340
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+ version_requirements: *2158660360
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  - !ruby/object:Gem::Dependency
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  name: bundler
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- requirement: &2158874760 !ruby/object:Gem::Requirement
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+ requirement: &2158659780 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -66,10 +77,10 @@ dependencies:
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  version: 1.0.0
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  type: :development
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  prerelease: false
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- version_requirements: *2158874760
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+ version_requirements: *2158659780
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  - !ruby/object:Gem::Dependency
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  name: jeweler
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- requirement: &2158874240 !ruby/object:Gem::Requirement
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+ requirement: &2158659200 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -77,10 +88,10 @@ dependencies:
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  version: 1.6.4
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  type: :development
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  prerelease: false
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- version_requirements: *2158874240
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+ version_requirements: *2158659200
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  - !ruby/object:Gem::Dependency
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  name: rcov
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- requirement: &2158873720 !ruby/object:Gem::Requirement
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+ requirement: &2158658680 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -88,7 +99,7 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2158873720
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+ version_requirements: *2158658680
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  description: Use the snp-search toolset to query the SNP database
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  email: ali.al-shahib@hpa.org.uk
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  executables:
@@ -132,7 +143,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  version: '0'
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  segments:
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  - 0
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- hash: 339676868583420236
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+ hash: 2333300887326022643
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  none: false
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  requirements: