simple_bioc 0.0.17 → 0.0.18

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: 1bf48d3b2bdee74d55beefe4769a7376d066b8ce
+  metadata.gz: 749f96d8570d8e0d152fd9098211170fddaa5dc8
+  data.tar.gz: e8c8587e689da368c10e641f3b6cf5157efabe03
 SHA512:
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+  metadata.gz: 325a9c9e9d23c896b57e6615c8efcc25bcffb678294d1b41eb0927881f39ef687611f4fa09ca162863c149e0114ac74dc18d611f7256f796b176a95fdf7c511f
+  data.tar.gz: c04562d884872cc1bda49c94dd632c943898684707dd019eeb73f3218a07b49f92571f122e7393c5a817dba6ac42aff60530e3c72ed3f111ede68b353bcbe573

data/lib/simple_bioc/bioc_reader.rb

@@ -52,7 +52,8 @@ module BioCReader
     ret.each do |node|
       instance = target_class.new(obj)
       ret = send(:"read_#{name}", node, instance, options)
-      obj.instance_variable_get(:"@#{name}s")  << instance if ret
+      arr = obj.instance_variable_get(:"@#{name}s")
+      arr  << instance if ret && !arr.nil?
     end
   end
 

data/lib/simple_bioc/bioc_writer.rb

@@ -89,6 +89,7 @@ module BioCWriter
   end
 
   def write_location(xml, location) 
+    next if location.nil?
     if location.original_offset.nil? || location.original_offset == location.offset
       xml.location(:offset => location.offset, :length => location.length)
     else

data/lib/simple_bioc/location_adjuster.rb

@@ -7,6 +7,7 @@ module SimpleBioC
         positions = find_all_locations(obj, a.text)
         next a.locations.nil?
         a.locations.each do |l|
+          next if l.nil?
           l.original_offset = l.offset.to_i if l.original_offset.nil?
           l.offset = choose_offset_candidate(l.offset, positions)
         end

data/lib/simple_bioc/version.rb

@@ -1,3 +1,3 @@
 module SimpleBioC
-  VERSION = "0.0.17"
+  VERSION = "0.0.18"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: simple_bioc
 version: !ruby/object:Gem::Version
-  version: 0.0.17
+  version: 0.0.18
 platform: ruby
 authors:
 - Dongseop Kwon