sequenceserver 0.8.1 → 0.8.2
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- data/bin/sequenceserver +5 -0
- data/lib/sequenceserver.rb +1 -0
- data/lib/sequenceserver/version.rb +9 -0
- data/public/js/sequenceserver.js +3 -0
- data/sequenceserver.gemspec +3 -3
- metadata +17 -16
data/bin/sequenceserver
CHANGED
@@ -47,6 +47,11 @@ BANNER
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47
47
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opts.on('-c', '--config CONFIG_FILE', 'Use the given configuration file') do |config_file|
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48
48
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SequenceServer::App.config_file = File.expand_path(config_file)
|
49
49
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end
|
50
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+
|
51
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+
opts.on('-v', '--version', 'Print version number of SequenceServer that will be loaded.' ) do |config_file|
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52
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+
puts SequenceServer.version
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53
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+
exit
|
54
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+
end
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50
55
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end.order!
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51
56
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52
57
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# of the remaining items in ARGV, the first one must be a subcommand
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data/lib/sequenceserver.rb
CHANGED
@@ -9,6 +9,7 @@ require 'sequenceserver/blast'
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9
9
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require 'sequenceserver/sequencehelpers'
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10
10
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require 'sequenceserver/sinatralikeloggerformatter'
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11
11
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require 'sequenceserver/customisation'
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12
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+
require 'sequenceserver/version'
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12
13
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13
14
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# Helper module - initialize the blast server.
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14
15
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module SequenceServer
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@@ -0,0 +1,9 @@
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1
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+
module SequenceServer
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2
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+
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3
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+
# Return version number of SequenceServer from the gemspec. Version number
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4
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+
# is read from gemspec, which might fail on older versions of Bundler or
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5
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+
# RubyGems. Return `nil` if version number couldn't be determined.
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6
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+
def self.version
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7
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+
Bundler.rubygems.loaded_specs('sequenceserver').version rescue nil
|
8
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+
end
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9
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+
end
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data/public/js/sequenceserver.js
CHANGED
@@ -219,6 +219,9 @@ $(document).ready(function(){
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219
219
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var url = action.slice(0, index);
|
220
220
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var hash = action.slice(index, action.length);
|
221
221
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|
222
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+
// reset hash so we can always _jump_ back to result
|
223
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+
location.hash = '';
|
224
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+
|
222
225
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// display a modal window and attach an activity spinner to it
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223
226
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$('#spinner').modal();
|
224
227
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$('#spinner > div').activity({
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data/sequenceserver.gemspec
CHANGED
@@ -1,7 +1,7 @@
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1
1
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Gem::Specification.new do |s|
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2
2
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# meta
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3
3
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s.name = 'sequenceserver'
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4
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-
s.version = '0.8.
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4
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+
s.version = '0.8.2'
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5
5
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s.authors = ['Anurag Priyam', 'Ben J Woodcroft', 'Yannick Wurm']
|
6
6
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s.email = 'anurag08priyam@gmail.com'
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7
7
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s.homepage = 'http://sequenceserver.com'
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@@ -13,8 +13,8 @@ SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user in
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13
13
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DESC
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14
14
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|
15
15
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# dependencies
|
16
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-
s.add_dependency('bundler')
|
17
|
-
s.add_dependency('sinatra', '
|
16
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+
s.add_dependency('bundler', '~> 1.2.0')
|
17
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+
s.add_dependency('sinatra', '~> 1.3.0')
|
18
18
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s.add_dependency('ptools')
|
19
19
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|
20
20
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s.add_development_dependency('minitest')
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metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: sequenceserver
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3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 0.8.
|
4
|
+
version: 0.8.2
|
5
5
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prerelease:
|
6
6
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platform: ruby
|
7
7
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authors:
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@@ -11,33 +11,33 @@ authors:
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11
11
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autorequire:
|
12
12
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bindir: bin
|
13
13
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cert_chain: []
|
14
|
-
date: 2012-
|
14
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+
date: 2012-09-01 00:00:00.000000000 Z
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15
15
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dependencies:
|
16
16
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- !ruby/object:Gem::Dependency
|
17
17
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name: bundler
|
18
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-
requirement: &
|
18
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+
requirement: &20416580 !ruby/object:Gem::Requirement
|
19
19
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none: false
|
20
20
|
requirements:
|
21
|
-
- -
|
21
|
+
- - ~>
|
22
22
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- !ruby/object:Gem::Version
|
23
|
-
version:
|
23
|
+
version: 1.2.0
|
24
24
|
type: :runtime
|
25
25
|
prerelease: false
|
26
|
-
version_requirements: *
|
26
|
+
version_requirements: *20416580
|
27
27
|
- !ruby/object:Gem::Dependency
|
28
28
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name: sinatra
|
29
|
-
requirement: &
|
29
|
+
requirement: &20398120 !ruby/object:Gem::Requirement
|
30
30
|
none: false
|
31
31
|
requirements:
|
32
|
-
- -
|
32
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+
- - ~>
|
33
33
|
- !ruby/object:Gem::Version
|
34
|
-
version: 1.
|
34
|
+
version: 1.3.0
|
35
35
|
type: :runtime
|
36
36
|
prerelease: false
|
37
|
-
version_requirements: *
|
37
|
+
version_requirements: *20398120
|
38
38
|
- !ruby/object:Gem::Dependency
|
39
39
|
name: ptools
|
40
|
-
requirement: &
|
40
|
+
requirement: &20396840 !ruby/object:Gem::Requirement
|
41
41
|
none: false
|
42
42
|
requirements:
|
43
43
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- - ! '>='
|
@@ -45,10 +45,10 @@ dependencies:
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|
45
45
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version: '0'
|
46
46
|
type: :runtime
|
47
47
|
prerelease: false
|
48
|
-
version_requirements: *
|
48
|
+
version_requirements: *20396840
|
49
49
|
- !ruby/object:Gem::Dependency
|
50
50
|
name: minitest
|
51
|
-
requirement: &
|
51
|
+
requirement: &20383420 !ruby/object:Gem::Requirement
|
52
52
|
none: false
|
53
53
|
requirements:
|
54
54
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- - ! '>='
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@@ -56,10 +56,10 @@ dependencies:
|
|
56
56
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version: '0'
|
57
57
|
type: :development
|
58
58
|
prerelease: false
|
59
|
-
version_requirements: *
|
59
|
+
version_requirements: *20383420
|
60
60
|
- !ruby/object:Gem::Dependency
|
61
61
|
name: rack-test
|
62
|
-
requirement: &
|
62
|
+
requirement: &20376580 !ruby/object:Gem::Requirement
|
63
63
|
none: false
|
64
64
|
requirements:
|
65
65
|
- - ! '>='
|
@@ -67,7 +67,7 @@ dependencies:
|
|
67
67
|
version: '0'
|
68
68
|
type: :development
|
69
69
|
prerelease: false
|
70
|
-
version_requirements: *
|
70
|
+
version_requirements: *20376580
|
71
71
|
description: ! 'SequenceServer lets you rapidly set up a BLAST+ server with an intuitive
|
72
72
|
user interface for use locally or over the web.
|
73
73
|
|
@@ -87,6 +87,7 @@ files:
|
|
87
87
|
- lib/sequenceserver/blast.rb
|
88
88
|
- lib/sequenceserver/web_blast/public/favicon.ico
|
89
89
|
- lib/sequenceserver/web_blast/public/js/sequenceserver.sequence-viewer.js
|
90
|
+
- lib/sequenceserver/version.rb
|
90
91
|
- lib/sequenceserver/database.rb
|
91
92
|
- views/search.erb
|
92
93
|
- views/500.erb
|