sequence_logo 1.3.0 → 1.3.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: dc12b7725ab623ff5dee66a5925bbaf2a03a0cc3297e8c3e5f5a97b6c60a390e
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data.tar.gz: aadd4b89207c6caf3d8ec80af8274d44e380c0996fb7c6894dd4f01ddecaab82
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: b3d6d67a23eca984f0113994cc7cce8a6565ad2dfa5091aa3f4ceeb29adfa8cba41f5ca7c750bb6164d112d517e7779ba319de208e9c19c5138509904defef42
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data.tar.gz: 4521b699696fada1861cbd0e568a7ee269e43ed0aec6a545f3b2f4d1c3b6398a6aca7998ac0a3c19dae575e1a36eec2ff4aa20b0d91d636253ea75273c5208a7
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FROM ruby:alpine
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RUN apk add --virtual .builddeps --update alpine-sdk curl gzip tar && \
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curl -o ImageMagick-6.9.10-14.tar.gz "http://mirror.checkdomain.de/imagemagick/ImageMagick-6.9.10-14.tar.gz" && \
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tar -zxf ImageMagick-6.9.10-14.tar.gz && \
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apk add --update libgcc libgomp libjpeg-turbo-dev libpng-dev && \
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cd ImageMagick-6.9.10-14 && \
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./configure && \
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make && \
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make install && \
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gem install rmagick --no-document && \
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apk del .builddeps && \
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cd / && \
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rm -rf ImageMagick-6.9.10-14.tar.gz ImageMagick-6.9.10-14 && \
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rm -rf /var/cache/apk/*
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@@ -0,0 +1,8 @@
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FROM ruby:slim
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RUN apt-get update && \
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apt-get install -y ruby build-essential imagemagick libmagickcore-dev libmagickwand-dev pkg-config && \
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gem install rmagick && \
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apt-get purge -y build-essential libmagickcore-dev libmagickwand-dev pkg-config && \
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apt-get autoremove -y && \
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apt-get clean && \
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rm -rf /var/lib/apt/lists/*
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@@ -77,6 +77,10 @@ begin
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options[:from_stdin] = true
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}
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parser.on('--output-file FILE', 'Resulting image name') {|fn|
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options[:output_file] = fn
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}
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parser.on('--dinucleotide'){ options[:from_dinucleotide] = true }
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end
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options = cli.parse_options!(argv)
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@@ -126,8 +130,18 @@ begin
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end
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end
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in_necessary_orientations(objects_to_render, options[:orientation], logo_folder)
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artifacts = in_necessary_orientations(objects_to_render, options[:orientation], logo_folder)
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if options[:output_file]
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if artifacts.size == 1
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# replace name
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artifacts.first[:filename] = options[:output_file]
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else
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raise 'When output file is specified, the only one logo can be rendered'
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end
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end
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artifacts.each do |infos|
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filename = File.absolute_path(infos[:filename], logo_folder)
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infos[:renderable].render(canvas_factory).write("PNG:#{filename}")
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end
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rescue => err
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metadata
CHANGED
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--- !ruby/object:Gem::Specification
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name: sequence_logo
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version: !ruby/object:Gem::Version
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version: 1.3.
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version: 1.3.1
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platform: ruby
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authors:
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- Ilya Vorontsov
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2018-
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date: 2018-12-07 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rmagick
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@@ -58,6 +58,9 @@ files:
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- TODO.txt
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- bin/glue_logos
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- bin/sequence_logo
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- docker/Dockerfile-rmagick-alpine
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- docker/Dockerfile-rmagick-slim
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- docker/Dockerfile-sequence_logo
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- lib/sequence_logo.rb
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- lib/sequence_logo/alignment.rb
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- lib/sequence_logo/assets/nucl_simpa/a.png
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@@ -119,7 +122,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.7.
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rubygems_version: 2.7.7
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signing_key:
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specification_version: 4
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summary: Tool for drawing sequence logos of motifs
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