seqtrimnext 2.0.55 → 2.0.56
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/History.txt +4 -0
- data/bin/split_fasta.rb +11 -14
- data/lib/seqtrimnext.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: cbaa208c6ee641cd3e26f387601b1da4ccd1f77c
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data.tar.gz: 25d86fde91a30d0f1b1bdfae3c5d7c7fa45ddfbf
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ea8c8e9c946171e3471899eb18cb85804520d48f686440911c23e00a7042f1b3f352328176683b9292c5faf069ac07f97833b300b760b76f4389ba966a5a298f
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7
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data.tar.gz: 2c7f19fa978f00479e8a77565942aaa4ba3616fd5029c5a20a9d75337fa22dcd962d1b99180eb279bd7c4af0a6bc7e9296a58e004cced80a16ac7cd29ff2fba2
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data/History.txt
CHANGED
data/bin/split_fasta.rb
CHANGED
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@@ -9,7 +9,7 @@ if ARGV.count < 3
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end
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-
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+
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fastq = ARGV.shift
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output_name = ARGV.shift
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split_by = ARGV.shift.to_i
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@@ -17,29 +17,26 @@ split_by = ARGV.shift.to_i
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file_index=1
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out=File.new("#{output_name}#{file_index}.fasta",'w')
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-
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fqr=FastaQualFile.new(fastq)
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count = 0
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fqr.each do |seq_name,seq_fasta,comments|
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out.puts(">#{seq_name+i.to_s} #{comments}")
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out.puts(seq_fasta)
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count
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if (count >= split_by)
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count=0
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if (count % split_by) == 0
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-
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file_index +=1
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out.close
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out=File.new("#{output_name}#{file_index}.fasta",'w')
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-
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end
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end
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-
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out.
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-
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out.puts(">#{seq_name} #{comments}")
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out.puts(seq_fasta)
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count +=1
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end
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out.close if out
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fqr.close
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data/lib/seqtrimnext.rb
CHANGED
metadata
CHANGED
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: seqtrimnext
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version: !ruby/object:Gem::Version
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version: 2.0.
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version: 2.0.56
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platform: ruby
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authors:
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- Dario Guerrero & Almudena Bocinos
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@@ -9,7 +9,7 @@ autorequire:
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bindir: bin
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cert_chain: []
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date: 2013-07-
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date: 2013-07-25 00:00:00 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: narray
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