search_biomodel 2.0.0 → 2.0.2
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- data/VERSION +1 -1
- data/lib/search_biomodel.rb +25 -1
- data/search_biomodel.gemspec +2 -2
- metadata +13 -13
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
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-
2.0.
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1
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+
2.0.2
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data/lib/search_biomodel.rb
CHANGED
@@ -36,7 +36,11 @@ module SysMODB
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|
36
36
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results = results.first(3)
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37
37
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|
38
38
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sbml_results = Array.new
|
39
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-
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39
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+
|
40
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+
results.each_with_index do |a, i|
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41
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+
sbml_results[i] = Hash.new
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42
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+
sbml_results[i] = Nori.parse(@connection.getSimpleModel(a))[:simple_models][:simple_model]
|
43
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+
end
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40
44
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sbml_results
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41
45
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end
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42
46
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@@ -57,6 +61,26 @@ module SysMODB
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57
61
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end
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58
62
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59
63
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|
64
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+
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65
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+
def getSimpleModel(model_id)
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66
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+
client = connection
|
67
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+
response = client.request(:biom, "get_simple_model_by_id") do
|
68
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+
soap.body = {:id => model_id, :attributes! => {:id => {"xsi:type" => "xsd:string"}}}
|
69
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+
end
|
70
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+
|
71
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+
search_results = response.to_hash[:get_simple_model_by_id_response][:get_simple_model_by_id_return]
|
72
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+
|
73
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+
if search_results.nil?
|
74
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+
[]
|
75
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+
else
|
76
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+
search_results
|
77
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+
end
|
78
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+
end
|
79
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+
|
80
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+
def test_stuffs()
|
81
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+
puts "Hi"
|
82
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+
end
|
83
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+
|
60
84
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#search_by_chebiid
|
61
85
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#search_by_name
|
62
86
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#search_by_person
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data/search_biomodel.gemspec
CHANGED
@@ -5,11 +5,11 @@
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|
5
5
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|
6
6
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Gem::Specification.new do |s|
|
7
7
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s.name = %q{search_biomodel}
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8
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-
s.version = "2.0.
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8
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+
s.version = "2.0.2"
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9
9
|
|
10
10
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
11
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s.authors = ["Niall Beard"]
|
12
|
-
s.date = %q{2012-02-
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12
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+
s.date = %q{2012-02-21}
|
13
13
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s.description = %q{Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine }
|
14
14
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s.email = %q{beardn9@cs.man.ac.uk}
|
15
15
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s.extra_rdoc_files = [
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metadata
CHANGED
@@ -1,13 +1,13 @@
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: search_biomodel
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
hash:
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4
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+
hash: 11
|
5
5
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prerelease: false
|
6
6
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segments:
|
7
7
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- 2
|
8
8
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- 0
|
9
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-
-
|
10
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-
version: 2.0.
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9
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+
- 2
|
10
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+
version: 2.0.2
|
11
11
|
platform: ruby
|
12
12
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authors:
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13
13
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- Niall Beard
|
@@ -15,13 +15,13 @@ autorequire:
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|
15
15
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bindir: bin
|
16
16
|
cert_chain: []
|
17
17
|
|
18
|
-
date: 2012-02-
|
18
|
+
date: 2012-02-21 00:00:00 +00:00
|
19
19
|
default_executable:
|
20
20
|
dependencies:
|
21
21
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- !ruby/object:Gem::Dependency
|
22
|
-
name: jeweler
|
23
22
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prerelease: false
|
24
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-
|
23
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+
name: jeweler
|
24
|
+
version_requirements: &id001 !ruby/object:Gem::Requirement
|
25
25
|
none: false
|
26
26
|
requirements:
|
27
27
|
- - ~>
|
@@ -32,12 +32,12 @@ dependencies:
|
|
32
32
|
- 6
|
33
33
|
- 2
|
34
34
|
version: 1.6.2
|
35
|
+
requirement: *id001
|
35
36
|
type: :development
|
36
|
-
version_requirements: *id001
|
37
37
|
- !ruby/object:Gem::Dependency
|
38
|
-
name: rcov
|
39
38
|
prerelease: false
|
40
|
-
|
39
|
+
name: rcov
|
40
|
+
version_requirements: &id002 !ruby/object:Gem::Requirement
|
41
41
|
none: false
|
42
42
|
requirements:
|
43
43
|
- - ">="
|
@@ -46,12 +46,12 @@ dependencies:
|
|
46
46
|
segments:
|
47
47
|
- 0
|
48
48
|
version: "0"
|
49
|
+
requirement: *id002
|
49
50
|
type: :development
|
50
|
-
version_requirements: *id002
|
51
51
|
- !ruby/object:Gem::Dependency
|
52
|
-
name: savon
|
53
52
|
prerelease: false
|
54
|
-
|
53
|
+
name: savon
|
54
|
+
version_requirements: &id003 !ruby/object:Gem::Requirement
|
55
55
|
none: false
|
56
56
|
requirements:
|
57
57
|
- - ~>
|
@@ -62,8 +62,8 @@ dependencies:
|
|
62
62
|
- 9
|
63
63
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- 2
|
64
64
|
version: 0.9.2
|
65
|
+
requirement: *id003
|
65
66
|
type: :development
|
66
|
-
version_requirements: *id003
|
67
67
|
description: "Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine "
|
68
68
|
email: beardn9@cs.man.ac.uk
|
69
69
|
executables: []
|