search_biomodel 1.0.2 → 1.0.3

data/Gemfile.lock

@@ -16,7 +16,7 @@ GEM
     nori (1.0.1)
     pyu-ntlm-http (0.1.3.1)
     rack (1.3.0)
-    rake (0.9.2)
+    rake (0.8.7)
     rcov (0.9.9)
     savon (0.9.2)
       builder (>= 2.1.2)

data/VERSION

@@ -1 +1 @@
-1.0.2
+1.0.3

data/lib/search_biomodel.rb

@@ -1,3 +1,5 @@
+
+
 require 'rubygems'
 require 'savon'
 
@@ -8,7 +10,7 @@ module SysMODB
   end
 
   module SearchBiomodel
-   
+
     def search_by_ChEBIID(search_string)
       client = create_connection
       response = client.request(:biom, "get_models_id_by_ch_ebi_id") do
@@ -35,6 +37,23 @@ module SysMODB
       return response.to_hash[:get_models_id_by_name_response][:get_models_id_by_name_return][:get_models_id_by_name_return]
     end
 
+   def get_models_id_by_person (search_string)
+      client = create_connection
+      response = client.request(:biom, "get_models_id_by_person") do
+        soap.body = { :personName => search_string, :attributes! => { :personName => { "xsi:type" => "xsd:string" } } }  
+      end
+      return response.to_hash[:get_models_id_by_person_response][:get_models_id_by_person_return][:get_models_id_by_person_return]
+   end
+
+   def get_model_name_by_id (search_string)
+      client = create_connection
+      response = client.request(:biom, "get_model_name_by_id") do
+        soap.body = { :id => search_string, :attributes! => { :id => { "xsi:type" => "xsd:string" } } }  
+      end
+      return response.to_hash[:get_model_name_by_id_response][:get_model_name_by_id_return]
+   end
+  
+
 
     private
    
@@ -45,9 +64,9 @@ module SysMODB
         client = Savon::Client.new do
           wsdl.document = "http://www.ebi.ac.uk/biomodels-main/services/BioModelsWebServices?wsdl"
           wsdl.namespace = "http://biomodels.ebi.ac.uk"
-        end #client
-      end #configure
-    end #create_connection
+        end
+      end
+    end 
 
 
   end #SearchBiomodel

data/search_biomodel.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = %q{search_biomodel}
-  s.version = "1.0.2"
+  s.version = "1.0.3"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Niall Beard"]
-  s.date = %q{2011-06-28}
+  s.date = %q{2011-07-05}
   s.description = %q{Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine }
   s.email = %q{beardn9@cs.man.ac.uk}
   s.extra_rdoc_files = [
@@ -26,7 +26,6 @@ Gem::Specification.new do |s|
     "VERSION",
     "lib/search_biomodel.rb",
     "search_biomodel.gemspec",
-    "test.rb",
     "test/helper.rb",
     "test/test_search_biomodel.rb"
   ]

data/test/test_search_biomodel.rb

@@ -1,5 +1,5 @@
 require 'test/unit'
-require 'search_biomodel'
+require '/home/cspc018/Work/Repos/gems/search_biomodel/lib/search_biomodel.rb'
 
 
 class TestSearchBiomodel < Test::Unit::TestCase
@@ -7,30 +7,54 @@ class TestSearchBiomodel < Test::Unit::TestCase
   include SysMODB::SearchBiomodel
 
    def test_find_all_models
+      puts "\n\n ---------------------find all models---------------------\n\n"
       response = []
       i=0
       response = get_all_models
-      response.each {|x| puts "\n\n Response #{i+=1}:   #{x[:value].to_s} "}
-      response.each {|x| assert_not_nil x[:value] }
+      response.each {|x| puts "Response #{i+=1}:   #{x[:key].to_s} "}
+      response.each {|x| assert_not_nil x[:key] }
+      assert_not_nil response
    end
 
 
    def test_search_by_ChEBIID
+      puts "\n\n ---------------------search by chebiid---------------------\n\n"
       response = []
       i = 0 
       response = search_by_ChEBIID("CHEBI:15422")
-      response.each {|x| puts "\n\n Response #{i+=1}:   #{x} "}
+      response.each {|x| puts "Response #{i+=1}:   #{x} "}
       response.each {|x| assert_not_nil x }
+      assert_not_nil response
    end
 
-
    def test_search_by_name
+      puts "\n\n ---------------------model ID by name---------------------\n\n"
       response = []
       i = 0 
       response = search_by_name("Kolomeisky2003")    #_MyosinV_Processivity")
-      response.each {|x| puts "\n\n Response #{i+=1}:   #{x} "}
+      response.each {|x| puts "Response #{i+=1}:   #{x} "}
       response.each {|x| assert_not_nil x }
+      assert_not_nil response
    end
+ 
+
+  def test_get_model_name_by_id
+      puts "\n\n ---------------------model name by ID---------------------\n\n"
+      response = get_model_name_by_id("BIOMD0000000190")
+      puts response
+      assert_not_nil response
+  end
+
+
 
+   def test_get_models_id_by_person
+      puts "\n\n ---------------------model ID by person---------------------\n\n"
+      response = []
+      i=0
+      response = get_models_id_by_person("Jim")
+      response.each {|x| puts "Response #{i+=1}:    #{x} "} 
+      response.each {|x| assert_not_nil x }
+      assert_not_nil response
+  end
 
 end

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: search_biomodel
 version: !ruby/object:Gem::Version 
-  hash: 19
+  hash: 17
   prerelease: false
   segments: 
   - 1
   - 0
-  - 2
-  version: 1.0.2
+  - 3
+  version: 1.0.3
 platform: ruby
 authors: 
 - Niall Beard
@@ -15,7 +15,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-06-28 00:00:00 +01:00
+date: 2011-07-05 00:00:00 +01:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -83,7 +83,6 @@ files:
 - VERSION
 - lib/search_biomodel.rb
 - search_biomodel.gemspec
-- test.rb
 - test/helper.rb
 - test/test_search_biomodel.rb
 has_rdoc: true

data/test.rb

@@ -1,24 +0,0 @@
-require 'rubygems'
-#require '/home/cspc018/Work/Repos/gems/search_biomodel/lib/search_biomodel.rb'
-require 'seach_biomodel'
-
-
-  include SysMODB::SearchBiomodel
-
-  puts "\n\n ------------------ List All -----------------------------\n\n"
-  all_models = get_all_models
-  all_models.each { |item| puts "ID = #{item[:key]}    |    NAME = #{item[:value]}\n" }
-
-
-  puts "\n\n ------------------ By Chebiid --------------------------\n\n"
-  i=0
-  models_by_chebiid = search_by_ChEBIID("CHEBI:15422")
-  models_by_chebiid.each { |item| puts "#{i+=1} #{item.to_s}\n"}
-
-
-  puts "\n\n ------------------ By Name -----------------------------\n\n"
-  i=0
-  models_by_name = search_by_name("Kolomeisky2003")
-  models_by_name.each { |item| puts "#{i+=1} #{item.to_s}\n"}
-
-  puts "\n ----------------------------------------------------------\n\n\n"