search_biomodel 0.1.1 → 0.1.2

data/VERSION

@@ -1 +1 @@
-0.1.1
+0.1.2

data/lib/search_biomodel.rb

@@ -1,4 +1,47 @@
-class search_biomodel
-  puts "HELLO WORLD"
-end
+require 'rubygems'
+require 'savon'
+
+module SysMODB
+
+  class SearchBiomodelException < Exception
+    puts "Awww maaaan. Didn't work"
+  end
+
+  module SearchBiomodel
+   
+    def search_by_ChEBIID
+      client = create_connection
+      response = client.request(:biom, "get_models_id_by_ch_ebi_id") do
+        soap.body = { :ChEBBId => value, :attributes! => { :ChEBBId => { "xsi:type" => "xsd:string" } } }  
+      end
+      return response.to_hash[:get_models_id_by_ch_ebi_id_response][:get_models_id_by_ch_ebi_id_return][:get_models_id_by_ch_ebi_id_return]
+    end
+    
+    def get_all_models
+      client = create_connection  
+      response = client.request :biom, "get_all_models" 
+      parse_responses response, "get_all_models"
+      return response.to_hash[:get_all_models_response][:get_all_models_return][:get_all_models_return]
+    end
+  
+    def get_models_id_by_name
+      client = create_connection
+      response = client.request(:biom, "get_models_id_by_name") do
+        soap.body = { :modelName => value, :attributes! => { :modelName => { "xsi:type" => "xsd:string" } } }  
+      end
+      return response.to_hash[:get_models_id_by_name_response][:get_models_id_by_name_return][:get_models_id_by_name_return]
+    end
+
+
+    private
+   
+    def create_connection
+      client = Savon::Client.new do
+        wsdl.document = "http://www.ebi.ac.uk/biomodels-main/services/BioModelsWebServices?wsdl"
+        wsdl.namespace = "http://biomodels.ebi.ac.uk"
+      end
+    end
+
+  end #SearchBiomodel
+end #SysMODB
 

data/search_biomodel.gemspec

@@ -0,0 +1,61 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = %q{search_biomodel}
+  s.version = "0.1.2"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["Niall Beard"]
+  s.date = %q{2011-06-27}
+  s.description = %q{Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine }
+  s.email = %q{beardn9@cs.man.ac.uk}
+  s.extra_rdoc_files = [
+    "LICENSE.txt",
+    "README.rdoc"
+  ]
+  s.files = [
+    ".document",
+    "Gemfile",
+    "Gemfile.lock",
+    "LICENSE.txt",
+    "README.rdoc",
+    "Rakefile",
+    "VERSION",
+    "lib/search_biomodel.rb",
+    "search_biomodel.gemspec",
+    "test.rb",
+    "test/helper.rb",
+    "test/test_search_biomodel.rb"
+  ]
+  s.homepage = %q{http://github.com/njall/search_biomodel}
+  s.licenses = ["MIT"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = %q{1.3.7}
+  s.summary = %q{Interfaces with BioModel search engine}
+
+  if s.respond_to? :specification_version then
+    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
+      s.add_development_dependency(%q<shoulda>, [">= 0"])
+      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
+      s.add_development_dependency(%q<jeweler>, ["~> 1.6.2"])
+      s.add_development_dependency(%q<rcov>, [">= 0"])
+    else
+      s.add_dependency(%q<shoulda>, [">= 0"])
+      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
+      s.add_dependency(%q<jeweler>, ["~> 1.6.2"])
+      s.add_dependency(%q<rcov>, [">= 0"])
+    end
+  else
+    s.add_dependency(%q<shoulda>, [">= 0"])
+    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
+    s.add_dependency(%q<jeweler>, ["~> 1.6.2"])
+    s.add_dependency(%q<rcov>, [">= 0"])
+  end
+end
+

data/test/test_search_biomodel.rb

@@ -1,7 +1,12 @@
-require 'helper'
+require 'test/unit'
+require 'search_biomodel'
+
 
 class TestSearchBiomodel < Test::Unit::TestCase
-  should "probably rename this file and start testing for real" do
-    flunk "hey buddy, you should probably rename this file and start testing for real"
+  include SysMODB::SearchBiomodel
+
+  def test_find_all_models
+    response =  get_all_models
+    assert_not_nil response
   end
 end

data/test.rb

@@ -0,0 +1 @@
+require 'search_biomodel.rb'

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: search_biomodel
 version: !ruby/object:Gem::Version 
-  hash: 25
+  hash: 31
   prerelease: false
   segments: 
   - 0
   - 1
-  - 1
-  version: 0.1.1
+  - 2
+  version: 0.1.2
 platform: ruby
 authors: 
 - Niall Beard
@@ -96,6 +96,8 @@ files:
 - Rakefile
 - VERSION
 - lib/search_biomodel.rb
+- search_biomodel.gemspec
+- test.rb
 - test/helper.rb
 - test/test_search_biomodel.rb
 has_rdoc: true