search_biomodel 0.1.1 → 0.1.2
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- data/VERSION +1 -1
- data/lib/search_biomodel.rb +46 -3
- data/search_biomodel.gemspec +61 -0
- data/test/test_search_biomodel.rb +8 -3
- data/test.rb +1 -0
- metadata +5 -3
data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.1.
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1
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+
0.1.2
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data/lib/search_biomodel.rb
CHANGED
@@ -1,4 +1,47 @@
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1
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-
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2
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-
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3
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-
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1
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+
require 'rubygems'
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2
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require 'savon'
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3
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+
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4
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module SysMODB
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5
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6
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class SearchBiomodelException < Exception
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puts "Awww maaaan. Didn't work"
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8
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end
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9
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+
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10
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module SearchBiomodel
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11
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12
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def search_by_ChEBIID
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13
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client = create_connection
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14
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response = client.request(:biom, "get_models_id_by_ch_ebi_id") do
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15
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soap.body = { :ChEBBId => value, :attributes! => { :ChEBBId => { "xsi:type" => "xsd:string" } } }
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16
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end
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17
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return response.to_hash[:get_models_id_by_ch_ebi_id_response][:get_models_id_by_ch_ebi_id_return][:get_models_id_by_ch_ebi_id_return]
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18
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end
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19
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20
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def get_all_models
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21
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client = create_connection
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response = client.request :biom, "get_all_models"
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23
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parse_responses response, "get_all_models"
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return response.to_hash[:get_all_models_response][:get_all_models_return][:get_all_models_return]
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25
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end
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26
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+
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27
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def get_models_id_by_name
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28
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client = create_connection
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response = client.request(:biom, "get_models_id_by_name") do
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soap.body = { :modelName => value, :attributes! => { :modelName => { "xsi:type" => "xsd:string" } } }
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31
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end
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32
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return response.to_hash[:get_models_id_by_name_response][:get_models_id_by_name_return][:get_models_id_by_name_return]
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33
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end
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34
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+
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35
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+
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36
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private
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37
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38
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def create_connection
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39
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client = Savon::Client.new do
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40
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wsdl.document = "http://www.ebi.ac.uk/biomodels-main/services/BioModelsWebServices?wsdl"
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41
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wsdl.namespace = "http://biomodels.ebi.ac.uk"
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42
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end
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43
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end
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44
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45
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end #SearchBiomodel
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46
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end #SysMODB
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4
47
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@@ -0,0 +1,61 @@
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1
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# Generated by jeweler
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2
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# DO NOT EDIT THIS FILE DIRECTLY
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# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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# -*- encoding: utf-8 -*-
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5
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6
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Gem::Specification.new do |s|
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7
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s.name = %q{search_biomodel}
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8
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s.version = "0.1.2"
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9
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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s.authors = ["Niall Beard"]
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s.date = %q{2011-06-27}
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s.description = %q{Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine }
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s.email = %q{beardn9@cs.man.ac.uk}
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s.extra_rdoc_files = [
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"LICENSE.txt",
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"README.rdoc"
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]
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s.files = [
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".document",
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"Gemfile",
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"Gemfile.lock",
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"LICENSE.txt",
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"README.rdoc",
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"Rakefile",
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"VERSION",
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27
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"lib/search_biomodel.rb",
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"search_biomodel.gemspec",
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29
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"test.rb",
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30
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"test/helper.rb",
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31
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"test/test_search_biomodel.rb"
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32
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]
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s.homepage = %q{http://github.com/njall/search_biomodel}
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34
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s.licenses = ["MIT"]
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35
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s.require_paths = ["lib"]
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36
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s.rubygems_version = %q{1.3.7}
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37
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s.summary = %q{Interfaces with BioModel search engine}
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38
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39
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if s.respond_to? :specification_version then
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current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
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s.specification_version = 3
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if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
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s.add_development_dependency(%q<shoulda>, [">= 0"])
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45
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s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
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46
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s.add_development_dependency(%q<jeweler>, ["~> 1.6.2"])
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47
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s.add_development_dependency(%q<rcov>, [">= 0"])
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48
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else
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49
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s.add_dependency(%q<shoulda>, [">= 0"])
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50
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s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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51
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s.add_dependency(%q<jeweler>, ["~> 1.6.2"])
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52
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s.add_dependency(%q<rcov>, [">= 0"])
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53
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end
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54
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else
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55
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s.add_dependency(%q<shoulda>, [">= 0"])
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56
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s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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57
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s.add_dependency(%q<jeweler>, ["~> 1.6.2"])
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58
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s.add_dependency(%q<rcov>, [">= 0"])
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59
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end
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end
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61
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@@ -1,7 +1,12 @@
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1
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-
require '
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1
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require 'test/unit'
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2
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require 'search_biomodel'
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3
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2
4
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3
5
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class TestSearchBiomodel < Test::Unit::TestCase
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4
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-
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5
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-
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6
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include SysMODB::SearchBiomodel
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7
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8
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def test_find_all_models
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9
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response = get_all_models
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10
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assert_not_nil response
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11
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end
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12
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end
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data/test.rb
ADDED
@@ -0,0 +1 @@
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1
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+
require 'search_biomodel.rb'
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metadata
CHANGED
@@ -1,13 +1,13 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: search_biomodel
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3
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version: !ruby/object:Gem::Version
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4
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-
hash:
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4
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+
hash: 31
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prerelease: false
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6
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segments:
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7
7
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- 0
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8
8
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- 1
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-
-
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10
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-
version: 0.1.
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9
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- 2
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version: 0.1.2
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11
11
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platform: ruby
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12
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authors:
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13
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- Niall Beard
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@@ -96,6 +96,8 @@ files:
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96
96
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- Rakefile
|
97
97
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- VERSION
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98
98
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- lib/search_biomodel.rb
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99
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+
- search_biomodel.gemspec
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100
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+
- test.rb
|
99
101
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- test/helper.rb
|
100
102
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- test/test_search_biomodel.rb
|
101
103
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has_rdoc: true
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