scbi_cominer 0.0.7 → 0.0.8

data/History.txt

@@ -1,3 +1,7 @@
+=== 0.0.8 2014-05-20
+
+Fix collect.to_a for ruby 1.9
+
 === 0.0.7 2012-10-04
 
 Published graph methods

data/README.rdoc

@@ -62,7 +62,11 @@ scbi_cominer is a ruby gem to calculate some interesting regions and statistics
 
 == INSTALL: 
 
-NOTE: You may need to install fftw3 library for your operating system prior to installing scbi_cominer.
+NOTE: You may need to install fftw3 library for your operating system prior to installing scbi_cominer. 
+
+And later install the ruby-fftw3 gem manually:
+
+gem install ruby-fftw3 -- --with-fftw3-dir=/mnt/home/soft/libs/programs/x86_64/libfftw3
 
 * gem install scbi_cominer
 

data/lib/scbi_cominer.rb

@@ -8,5 +8,5 @@ $: << File.join(File.dirname(__FILE__),File.basename(__FILE__,File.extname(__FIL
 require 'cominer.rb'
 
 module ScbiCominer
-   VERSION = '0.0.7'
+   VERSION = '0.0.8'
 end

data/lib/scbi_cominer/classes/base_function.rb

@@ -371,7 +371,7 @@ class BaseFunction
         plot.xlabel ''
         plot.noxtics
 
-        x = (0..@fft.original_data.length-1).collect
+        x = (0..@fft.original_data.length-1).collect.to_a
         y = @fft.original_data.to_a
 
         plot.data << Gnuplot::DataSet.new( [x, y] ) do |ds|
@@ -379,7 +379,7 @@ class BaseFunction
           #ds.notitle
         end
 
-        x = (0..@fft.filtered_data.length-1).collect
+        x = (0..@fft.filtered_data.length-1).collect.to_a
         y = @fft.filtered_data.to_a
 
         plot.data << Gnuplot::DataSet.new( [x, y] ) do |ds|
@@ -478,7 +478,7 @@ class BaseFunction
         plot.ylabel "f"
         plot.xlabel "x"
 
-        x = (0..@fft.original_data.length-1).collect
+        x = (0..@fft.original_data.length-1).collect.to_a
 
         y = @fft.original_data.to_a
 
@@ -487,7 +487,7 @@ class BaseFunction
           ds.notitle
         end
 
-        x = (0..@fft.filtered_data.length-1).collect
+        x = (0..@fft.filtered_data.length-1).collect.to_a
         y = @fft.filtered_data.to_a
 
         plot.data << Gnuplot::DataSet.new( [x, y] ) do |ds|
@@ -495,7 +495,7 @@ class BaseFunction
           ds.notitle
         end
 
-        x = (0..@fft.filtered_data.length-1).collect
+        x = (0..@fft.filtered_data.length-1).collect.to_a
         y = [@lim1]
         @fft.filtered_data.length.times  { y.push(@lim1) }
 
@@ -504,7 +504,7 @@ class BaseFunction
           ds.notitle
         end
 
-        x = (0..@fft.filtered_data.length-1).collect
+        x = (0..@fft.filtered_data.length-1).collect.to_a
         y = [@lim2]
         @fft.filtered_data.length.times  { y.push(@lim2) }
 

metadata

@@ -1,84 +1,140 @@
---- !ruby/object:Gem::Specification 
+--- !ruby/object:Gem::Specification
 name: scbi_cominer
-version: !ruby/object:Gem::Version 
+version: !ruby/object:Gem::Version
+  version: 0.0.8
   prerelease: 
-  version: 0.0.7
 platform: ruby
-authors: 
+authors:
 - Dario Guerrero
 autorequire: 
 bindir: bin
 cert_chain: []
-
-date: 2012-10-04 00:00:00 Z
-dependencies: 
-- !ruby/object:Gem::Dependency 
+date: 2014-05-20 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
   name: scbi_ace
-  prerelease: false
-  requirement: &id001 !ruby/object:Gem::Requirement 
+  requirement: !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
         version: 0.0.5
   type: :runtime
-  version_requirements: *id001
-- !ruby/object:Gem::Dependency 
-  name: narray
   prerelease: false
-  requirement: &id002 !ruby/object:Gem::Requirement 
+  version_requirements: !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 0.0.5
+- !ruby/object:Gem::Dependency
+  name: narray
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
         version: 0.5.9.8
   type: :runtime
-  version_requirements: *id002
-- !ruby/object:Gem::Dependency 
-  name: ruby-fftw3
   prerelease: false
-  requirement: &id003 !ruby/object:Gem::Requirement 
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 0.5.9.8
+- !ruby/object:Gem::Dependency
+  name: ruby-fftw3
+  requirement: !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        version: "0.4"
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0.4'
   type: :runtime
-  version_requirements: *id003
-- !ruby/object:Gem::Dependency 
-  name: gnuplot
   prerelease: false
-  requirement: &id004 !ruby/object:Gem::Requirement 
+  version_requirements: !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0.4'
+- !ruby/object:Gem::Dependency
+  name: gnuplot
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
         version: 2.3.4
   type: :runtime
-  version_requirements: *id004
-- !ruby/object:Gem::Dependency 
-  name: hoe
   prerelease: false
-  requirement: &id005 !ruby/object:Gem::Requirement 
+  version_requirements: !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        version: 2.8.0
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 2.3.4
+- !ruby/object:Gem::Dependency
+  name: rdoc
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '4.0'
   type: :development
-  version_requirements: *id005
-description: scbi_cominer is a ruby gem to calculate some interesting regions and statistics from contigs
-email: 
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '4.0'
+- !ruby/object:Gem::Dependency
+  name: newgem
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 1.5.3
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 1.5.3
+- !ruby/object:Gem::Dependency
+  name: hoe
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '3.7'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '3.7'
+description: scbi_cominer is a ruby gem to calculate some interesting regions and
+  statistics from contigs
+email:
 - dariogf@gmail.com
 executables: []
-
 extensions: []
-
-extra_rdoc_files: 
+extra_rdoc_files:
 - History.txt
 - Manifest.txt
 - PostInstall.txt
-files: 
+- README.rdoc
+files:
 - History.txt
 - lib/scbi_cominer/classes/base_function.rb
 - lib/scbi_cominer/classes/entropy_function.rb
@@ -95,34 +151,35 @@ files:
 - script/generate
 - test/test_helper.rb
 - test/test_scbi_cominer.rb
+- .gemtest
 homepage: http://www.scbi.uma.es/downloads
-licenses: []
-
+licenses:
+- MIT
 post_install_message: PostInstall.txt
-rdoc_options: 
+rdoc_options:
 - --main
 - README.rdoc
-require_paths: 
+require_paths:
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement 
+required_ruby_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
-required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
 requirements: []
-
 rubyforge_project: scbi_cominer
-rubygems_version: 1.8.24
+rubygems_version: 1.8.23
 signing_key: 
 specification_version: 3
-summary: scbi_cominer is a ruby gem to calculate some interesting regions and statistics from contigs
-test_files: 
+summary: scbi_cominer is a ruby gem to calculate some interesting regions and statistics
+  from contigs
+test_files:
 - test/test_helper.rb
 - test/test_scbi_cominer.rb