sam 0.0.1 → 0.0.2

data/lib/sam.rb

@@ -7,14 +7,6 @@ public
     parse_line(line) if line != nil
   end
 
-  def int_or_neg1(x)
-    Integer(x) rescue -1
-  end
-
-  def int_or_raw(x)
-    Integer(x) rescue x
-  end
-
   def parse_line(line)
     return false if line[0] == "@"
     
@@ -24,7 +16,7 @@ public
     # colnames = %w(1:name 2:flag 3:chr 4:pos 5:mapq 6:cigar 7:mchr 8:mpos 9:insrt 10:seq 11:qual)
 
     @name = f[0]
-    @flag = f[1]
+    @flag = int_or_raw(f[1])
     @chrom = f[2]
     @pos = int_or_neg1(f[3])
     @mapq = int_or_neg1(f[4])
@@ -50,4 +42,14 @@ public
     return true;
   end
 
+private
+
+  def int_or_neg1(x)
+    Integer(x) rescue -1
+  end
+
+  def int_or_raw(x)
+    Integer(x) rescue x
+  end
+
 end

metadata

@@ -2,7 +2,7 @@
 name: sam
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 0.0.1
+  version: 0.0.2
 platform: ruby
 authors: 
 - Jesse Rodriguez
@@ -23,7 +23,7 @@ extra_rdoc_files: []
 
 files: 
 - lib/sam.rb
-homepage: http://rubygems.org/gems/sam
+homepage: https://github.com/jesserod/samruby
 licenses: []
 
 post_install_message: