rumale 0.18.5 → 0.18.6

checksums.yaml

@@ -1,7 +1,7 @@
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data/.rubocop.yml

@@ -7,7 +7,7 @@ AllCops:
   DisplayCopNames: true
   DisplayStyleGuide: true
   Exclude:
-    - 'bin/*'
+    - 'ext/rumale/extconf.rb'
     - 'rumale.gemspec'
     - 'Rakefile'
     - 'Gemfile'

data/.travis.yml

@@ -1,6 +1,6 @@
-os: linux
-dist: xenial
+---
 language: ruby
+cache: bundler
 rvm:
   - '2.4'
   - '2.5'
@@ -14,4 +14,4 @@ addons:
       - liblapacke-dev
 
 before_install:
-  - gem install bundler -v 2.0.2
+  - gem install bundler -v 2.1.4

data/CHANGELOG.md

@@ -1,3 +1,7 @@
+# 0.18.6
+- Fix some configuration files.
+- Update API documentation.
+
 # 0.18.5
 - Add functions for calculation of cosine similarity and distance to [Rumale::PairwiseMetric](https://yoshoku.github.io/rumale/doc/Rumale/PairwiseMetric.html).
 - Refactor some codes with Rubocop.

data/Gemfile

@@ -2,3 +2,10 @@ source 'https://rubygems.org'
 
 # Specify your gem's dependencies in rumale.gemspec
 gemspec
+
+gem 'coveralls', '~> 0.8'
+gem 'numo-linalg', '>= 0.1.4'
+gem 'parallel', '>= 1.17.0'
+gem 'rake', '~> 12.0'
+gem 'rake-compiler', '~> 1.0'
+gem 'rspec', '~> 3.0'

data/README.md

@@ -200,7 +200,7 @@ $ ruby pipeline.rb
 5-CV mean accuracy: 99.6 %
 ```
 
-## Speeding up
+## Speed up
 
 ### Numo::Linalg
 Loading the [Numo::Linalg](https://github.com/ruby-numo/numo-linalg) allows to perform matrix product of Numo::NArray using BLAS libraries.
@@ -259,13 +259,6 @@ When -1 is given to n_jobs parameter, all processors are used.
 estimator = Rumale::Ensemble::RandomForestClassifier.new(n_jobs: -1, random_seed: 1)
 ```
 
-
-## Development
-
-After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
-
-To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
-
 ## Contributing
 
 Bug reports and pull requests are welcome on GitHub at https://github.com/yoshoku/rumale.

data/lib/rumale/clustering/dbscan.rb

@@ -13,7 +13,7 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - M. Ester, H-P. Kriegel, J. Sander, and X. Xu, "A density-based algorithm for discovering clusters in large spatial databases with noise," Proc. KDD' 96, pp. 266--231, 1996.
+    # - Ester, M., Kriegel, H-P., Sander, J., and Xu, X., "A density-based algorithm for discovering clusters in large spatial databases with noise," Proc. KDD' 96, pp. 266--231, 1996.
     class DBSCAN
       include Base::BaseEstimator
       include Base::ClusterAnalyzer

data/lib/rumale/clustering/hdbscan.rb

@@ -15,9 +15,9 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - R J. G. B. Campello, D. Moulavi, A. Zimek, and J. Sander, "Hierarchical Density Estimates for Data Clustering, Visualization, and Outlier Detection," TKDD, Vol. 10 (1), pp. 5:1--5:51, 2015.
-    # - R J. G. B. Campello, D. Moulavi, and J Sander, "Density-Based Clustering Based on Hierarchical Density Estimates," Proc. PAKDD'13, pp. 160--172, 2013.
-    # - L. Lelis and J. Sander, "Semi-Supervised Density-Based Clustering," Proc. ICDM'09, pp. 842--847, 2009.
+    # - Campello, R J. G. B., Moulavi, D., Zimek, A., and Sander, J., "Hierarchical Density Estimates for Data Clustering, Visualization, and Outlier Detection," TKDD, Vol. 10 (1), pp. 5:1--5:51, 2015.
+    # - Campello, R J. G. B., Moulavi, D., and Sander, J., "Density-Based Clustering Based on Hierarchical Density Estimates," Proc. PAKDD'13, pp. 160--172, 2013.
+    # - Lelis, L., and Sander, J., "Semi-Supervised Density-Based Clustering," Proc. ICDM'09, pp. 842--847, 2009.
     class HDBSCAN
       include Base::BaseEstimator
       include Base::ClusterAnalyzer

data/lib/rumale/clustering/k_means.rb

@@ -15,7 +15,7 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - D. Arthur and S. Vassilvitskii, "k-means++: the advantages of careful seeding," Proc. SODA'07, pp. 1027--1035, 2007.
+    # - Arthur, D., and Vassilvitskii, S., "k-means++: the advantages of careful seeding," Proc. SODA'07, pp. 1027--1035, 2007.
     class KMeans
       include Base::BaseEstimator
       include Base::ClusterAnalyzer

data/lib/rumale/clustering/k_medoids.rb

@@ -13,7 +13,7 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - D. Arthur and S. Vassilvitskii, "k-means++: the advantages of careful seeding," Proc. SODA'07, pp. 1027--1035, 2007.
+    # - Arthur, D., and Vassilvitskii, S., "k-means++: the advantages of careful seeding," Proc. SODA'07, pp. 1027--1035, 2007.
     class KMedoids
       include Base::BaseEstimator
       include Base::ClusterAnalyzer

data/lib/rumale/clustering/power_iteration.rb

@@ -13,7 +13,7 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - F. Lin and W W. Cohen, "Power Iteration Clustering," Proc. ICML'10, pp. 655--662, 2010.
+    # - Lin, F., and Cohen, W W., "Power Iteration Clustering," Proc. ICML'10, pp. 655--662, 2010.
     class PowerIteration
       include Base::BaseEstimator
       include Base::ClusterAnalyzer

data/lib/rumale/clustering/single_linkage.rb

@@ -15,7 +15,7 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - D. Mullner, "Modern hierarchical, agglomerative clustering algorithms," arXiv:1109.2378, 2011.
+    # - Mullner, D., "Modern hierarchical, agglomerative clustering algorithms," arXiv:1109.2378, 2011.
     class SingleLinkage
       include Base::BaseEstimator
       include Base::ClusterAnalyzer

data/lib/rumale/clustering/snn.rb

@@ -13,8 +13,8 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - L. Ertoz, M. Steinbach, and V. Kumar, "Finding Clusters of Different Sizes, Shapes, and Densities in Noisy, High Dimensional Data," Proc. SDM'03, pp. 47--58, 2003.
-    # - M E. Houle, H-P. Kriegel, P. Kroger, E. Schubert, and A. Zimek, "Can Shared-Neighbor Distances Defeat the Curse of Dimensionality?," Proc. SSDBM'10, pp. 482--500, 2010.
+    # - Ertoz, L., Steinbach, M., and Kumar, V., "Finding Clusters of Different Sizes, Shapes, and Densities in Noisy, High Dimensional Data," Proc. SDM'03, pp. 47--58, 2003.
+    # - Houle, M E., Kriegel, H-P., Kroger, P., Schubert, E., and Zimek, A., "Can Shared-Neighbor Distances Defeat the Curse of Dimensionality?," Proc. SSDBM'10, pp. 482--500, 2010.
     class SNN < DBSCAN
       # Create a new cluster analyzer with Shared Neareset Neighbor method.
       #

data/lib/rumale/clustering/spectral_clustering.rb

@@ -16,8 +16,8 @@ module Rumale
     #   cluster_labels = analyzer.fit_predict(samples)
     #
     # *Reference*
-    # - A Y. Ng, M I. Jordan, and Y. Weiss, "On Spectral Clustering: Analyssi and an algorithm," Proc. NIPS'01, pp. 849--856, 2001.
-    # - U von Luxburg, "A tutorial on spectral clustering," Statistics and Computing, Vol. 17 (4), pp. 395--416, 2007.
+    # - Ng, A Y., Jordan, M I., and Weiss, Y., "On Spectral Clustering: Analyssi and an algorithm," Proc. NIPS'01, pp. 849--856, 2001.
+    # - von Luxburg, U., "A tutorial on spectral clustering," Statistics and Computing, Vol. 17 (4), pp. 395--416, 2007.
     class SpectralClustering
       include Base::BaseEstimator
       include Base::ClusterAnalyzer

data/lib/rumale/decomposition/factor_analysis.rb

@@ -14,7 +14,7 @@ module Rumale
     #   representaion = decomposer.fit_transform(samples)
     #
     # *Reference*
-    # - D. Barber, "Bayesian Reasoning and Machine Learning," Cambridge University Press, 2012.
+    # - Barber, D., "Bayesian Reasoning and Machine Learning," Cambridge University Press, 2012.
     class FactorAnalysis
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/decomposition/fast_ica.rb

@@ -14,8 +14,8 @@ module Rumale
     #   source_data = transformer.fit_transform(observed_data)
     #
     # *Reference*
-    # - A. Hyvarinen "Fast and Robust Fixed-Point Algorithms for Independent Component Analysis," IEEE Trans. Neural Networks, Vol. 10 (3), pp. 626--634, 1999.
-    # - A. Hyvarinen and E. Oja, "Independent Component Analysis: Algorithms and Applications," Neural Networks, Vol. 13 (4-5), pp. 411--430, 2000.
+    # - Hyvarinen, A., "Fast and Robust Fixed-Point Algorithms for Independent Component Analysis," IEEE Trans. Neural Networks, Vol. 10 (3), pp. 626--634, 1999.
+    # - Hyvarinen, A., and Oja, E., "Independent Component Analysis: Algorithms and Applications," Neural Networks, Vol. 13 (4-5), pp. 411--430, 2000.
     class FastICA
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/decomposition/nmf.rb

@@ -13,7 +13,7 @@ module Rumale
     #   representaion = decomposer.fit_transform(samples)
     #
     # *Reference*
-    # - W. Xu, X. Liu, and Y.Gong, "Document Clustering Based On Non-negative Matrix Factorization," Proc. SIGIR' 03 , pp. 267--273, 2003.
+    # - Xu, W., Liu, X., and Gong, Y., "Document Clustering Based On Non-negative Matrix Factorization," Proc. SIGIR' 03 , pp. 267--273, 2003.
     class NMF
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/decomposition/pca.rb

@@ -18,7 +18,7 @@ module Rumale
     #   representaion = decomposer.fit_transform(samples)
     #
     # *Reference*
-    # - A. Sharma and K K. Paliwal, "Fast principal component analysis using fixed-point algorithm," Pattern Recognition Letters, 28, pp. 1151--1155, 2007.
+    # - Sharma, A., and Paliwal, K K., "Fast principal component analysis using fixed-point algorithm," Pattern Recognition Letters, 28, pp. 1151--1155, 2007.
     class PCA
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/ensemble/ada_boost_classifier.rb

@@ -19,7 +19,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - J. Zhu, S. Rosset, H. Zou, and T.Hashie, "Multi-class AdaBoost," Technical Report No. 430, Department of Statistics, University of Michigan, 2005.
+    # - Zhu, J., Rosset, S., Zou, H., and Hashie, T., "Multi-class AdaBoost," Technical Report No. 430, Department of Statistics, University of Michigan, 2005.
     class AdaBoostClassifier
       include Base::BaseEstimator
       include Base::Classifier

data/lib/rumale/ensemble/ada_boost_regressor.rb

@@ -18,8 +18,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - D. L. Shrestha and D. P. Solomatine, "Experiments with AdaBoost.RT, an Improved Boosting Scheme for Regression," Neural Computation 18 (7), pp. 1678--1710, 2006.
-    #
+    # - Shrestha, D. L., and Solomatine, D. P., "Experiments with AdaBoost.RT, an Improved Boosting Scheme for Regression," Neural Computation 18 (7), pp. 1678--1710, 2006.
     class AdaBoostRegressor
       include Base::BaseEstimator
       include Base::Regressor

data/lib/rumale/ensemble/extra_trees_classifier.rb

@@ -18,7 +18,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - P. Geurts, D. Ernst, and L. Wehenkel, "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
+    # - Geurts, P., Ernst, D., and Wehenkel, L., "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
     class ExtraTreesClassifier < RandomForestClassifier
       # Return the set of estimators.
       # @return [Array<ExtraTreeClassifier>]

data/lib/rumale/ensemble/extra_trees_regressor.rb

@@ -18,7 +18,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - P. Geurts, D. Ernst, and L. Wehenkel, "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
+    # - Geurts, P., Ernst, D., and Wehenkel, L., "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
     class ExtraTreesRegressor < RandomForestRegressor
       # Return the set of estimators.
       # @return [Array<ExtraTreeRegressor>]

data/lib/rumale/ensemble/gradient_boosting_classifier.rb

@@ -18,10 +18,10 @@ module Rumale
     #   estimator.fit(training_samples, traininig_values)
     #   results = estimator.predict(testing_samples)
     #
-    # *reference*
-    # - J H. Friedman, "Greedy Function Approximation: A Gradient Boosting Machine," Annals of Statistics, 29 (5), pp. 1189--1232, 2001.
-    # - J H. Friedman, "Stochastic Gradient Boosting," Computational Statistics and Data Analysis, 38 (4), pp. 367--378, 2002.
-    # - T. Chen and C. Guestrin, "XGBoost: A Scalable Tree Boosting System,"  Proc. KDD'16, pp. 785--794, 2016.
+    # *Reference*
+    # - Friedman, J H., "Greedy Function Approximation: A Gradient Boosting Machine," Annals of Statistics, 29 (5), pp. 1189--1232, 2001.
+    # - Friedman, J H., "Stochastic Gradient Boosting," Computational Statistics and Data Analysis, 38 (4), pp. 367--378, 2002.
+    # - Chen, T., and Guestrin, C., "XGBoost: A Scalable Tree Boosting System," Proc. KDD'16, pp. 785--794, 2016.
     #
     class GradientBoostingClassifier
       include Base::BaseEstimator

data/lib/rumale/ensemble/gradient_boosting_regressor.rb

@@ -17,10 +17,10 @@ module Rumale
     #   estimator.fit(training_samples, traininig_values)
     #   results = estimator.predict(testing_samples)
     #
-    # *reference*
-    # - J H. Friedman, "Greedy Function Approximation: A Gradient Boosting Machine," Annals of Statistics, 29 (5), pp. 1189--1232, 2001.
-    # - J H. Friedman, "Stochastic Gradient Boosting," Computational Statistics and Data Analysis, 38 (4), pp. 367--378, 2002.
-    # - T. Chen and C. Guestrin, "XGBoost: A Scalable Tree Boosting System,"  Proc. KDD'16, pp. 785--794, 2016.
+    # *Reference*
+    # - Friedman, J H. "Greedy Function Approximation: A Gradient Boosting Machine," Annals of Statistics, 29 (5), pp. 1189--1232, 2001.
+    # - Friedman, J H. "Stochastic Gradient Boosting," Computational Statistics and Data Analysis, 38 (4), pp. 367--378, 2002.
+    # - Chen, T., and Guestrin, C., "XGBoost: A Scalable Tree Boosting System,"  Proc. KDD'16, pp. 785--794, 2016.
     #
     class GradientBoostingRegressor
       include Base::BaseEstimator

data/lib/rumale/evaluation_measure/adjusted_rand_score.rb

@@ -11,7 +11,7 @@ module Rumale
     #   puts evaluator.score(ground_truth, predicted)
     #
     # *Reference*
-    # - N X. Vinh, J. Epps, and J. Bailey, "Information Theoretic Measures for Clusterings Comparison: Variants, Properties, Normalization and Correction for Chance", J. Machine Learnig Research, Vol. 11, pp.2837--2854, 2010.
+    # - Vinh, N X., Epps, J., and Bailey, J., "Information Theoretic Measures for Clusterings Comparison: Variants, Properties, Normalization and Correction for Chance", J. Machine Learnig Research, Vol. 11, pp.2837--2854, 2010.
     class AdjustedRandScore
       include Base::Evaluator
 

data/lib/rumale/evaluation_measure/calinski_harabasz_score.rb

@@ -11,7 +11,7 @@ module Rumale
     #   puts evaluator.score(x, predicted)
     #
     # *Reference*
-    # - T. Calinski and J. Harabsz, "A dendrite method for cluster analysis," Communication in Statistics, Vol. 3 (1), pp. 1--27, 1972.
+    # - Calinski, T., and Harabsz, J., "A dendrite method for cluster analysis," Communication in Statistics, Vol. 3 (1), pp. 1--27, 1972.
     class CalinskiHarabaszScore
       include Base::Evaluator
 

data/lib/rumale/evaluation_measure/davies_bouldin_score.rb

@@ -12,7 +12,7 @@ module Rumale
     #   puts evaluator.score(x, predicted)
     #
     # *Reference*
-    # - D L. Davies and D W. Bouldin, "A Cluster Separation Measure," IEEE Trans. Pattern Analysis and Machine Intelligence, Vol. PAMI-1, No. 2, pp. 224--227, 1979.
+    # - Davies, D L., and Bouldin, D W., "A Cluster Separation Measure," IEEE Trans. Pattern Analysis and Machine Intelligence, Vol. PAMI-1, No. 2, pp. 224--227, 1979.
     class DaviesBouldinScore
       include Base::Evaluator
 

data/lib/rumale/evaluation_measure/mutual_information.rb

@@ -11,7 +11,7 @@ module Rumale
     #   puts evaluator.score(ground_truth, predicted)
     #
     # *Reference*
-    # - N X. Vinh, J. Epps, and J. Bailey, "Information Theoretic Measures for Clusterings Comparison: Variants, Properties, Normalization and Correction for Chance," J. Machine Learning Research, vol. 11, pp. 2837--1854, 2010.
+    # - Vinh, N X., Epps, J., and Bailey, J., "Information Theoretic Measures for Clusterings Comparison: Variants, Properties, Normalization and Correction for Chance," J. Machine Learning Research, vol. 11, pp. 2837--1854, 2010.
     class MutualInformation
       include Base::Evaluator
 

data/lib/rumale/evaluation_measure/normalized_mutual_information.rb

@@ -12,8 +12,8 @@ module Rumale
     #   puts evaluator.score(ground_truth, predicted)
     #
     # *Reference*
-    # - C D. Manning, P. Raghavan, and H. Schutze, "Introduction to Information Retrieval," Cambridge University Press., 2008.
-    # - N X. Vinh, J. Epps, and J. Bailey, "Information Theoretic Measures for Clusterings Comparison: Variants, Properties, Normalization and Correction for Chance," J. Machine Learning Research, vol. 11, pp. 2837--1854, 2010.
+    # - Manning, C D., Raghavan, P., and Schutze, H., "Introduction to Information Retrieval," Cambridge University Press., 2008.
+    # - Vinh, N X., Epps, J., and Bailey, J., "Information Theoretic Measures for Clusterings Comparison: Variants, Properties, Normalization and Correction for Chance," J. Machine Learning Research, vol. 11, pp. 2837--1854, 2010.
     class NormalizedMutualInformation
       include Base::Evaluator
 

data/lib/rumale/evaluation_measure/purity.rb

@@ -11,7 +11,7 @@ module Rumale
     #   puts evaluator.score(ground_truth, predicted)
     #
     # *Reference*
-    # - C D. Manning, P. Raghavan, and H. Schutze, "Introduction to Information Retrieval," Cambridge University Press., 2008.
+    # - Manning, C D., Raghavan, P., and Schutze, H., "Introduction to Information Retrieval," Cambridge University Press., 2008.
     class Purity
       include Base::Evaluator
 

data/lib/rumale/evaluation_measure/silhouette_score.rb

@@ -12,7 +12,7 @@ module Rumale
     #   puts evaluator.score(x, predicted)
     #
     # *Reference*
-    # - P J. Rousseuw, "Silhouettes: A graphical aid to the interpretation and validation of cluster analysis," Journal of Computational and Applied Mathematics, Vol. 20, pp. 53--65, 1987.
+    # - Rousseuw, P J., "Silhouettes: A graphical aid to the interpretation and validation of cluster analysis," Journal of Computational and Applied Mathematics, Vol. 20, pp. 53--65, 1987.
     class SilhouetteScore
       include Base::Evaluator
 

data/lib/rumale/kernel_approximation/nystroem.rb

@@ -16,7 +16,7 @@ module Rumale
     #   new_testing_samples = transformer.transform(testing_samples)
     #
     # *Reference*
-    # 1. T. Yang, Y. Li, M. Mahdavi, R. Jin, and Z-H. Zhou, "Nystrom Method vs Random Fourier Features: A Theoretical and Empirical Comparison," Advances in NIPS'12, Vol. 1, pp. 476--484, 2012.
+    # - Yang, T., Li, Y., Mahdavi, M., Jin, R., and Zhou, Z-H., "Nystrom Method vs Random Fourier Features: A Theoretical and Empirical Comparison," Advances in NIPS'12, Vol. 1, pp. 476--484, 2012.
     class Nystroem
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/kernel_approximation/rbf.rb

@@ -15,7 +15,7 @@ module Rumale
     #   new_testing_samples = transformer.transform(testing_samples)
     #
     # *Refernce*:
-    # 1. A. Rahimi and B. Recht, "Random Features for Large-Scale Kernel Machines," Proc. NIPS'07, pp.1177--1184, 2007.
+    # - Rahimi, A., and Recht, B., "Random Features for Large-Scale Kernel Machines," Proc. NIPS'07, pp.1177--1184, 2007.
     class RBF
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/kernel_machine/kernel_fda.rb

@@ -18,7 +18,7 @@ module Rumale
     #   mapped_test_samples = kfda.transform(kernel_mat_test)
     #
     # *Reference*
-    # - Baudat, G. and Anouar, F., "Generalized Discriminant Analysis using a Kernel Approach," Neural Computation, vol. 12, pp. 2385--2404, 2000.
+    # - Baudat, G., and Anouar, F., "Generalized Discriminant Analysis using a Kernel Approach," Neural Computation, vol. 12, pp. 2385--2404, 2000.
     class KernelFDA
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/kernel_machine/kernel_pca.rb

@@ -18,7 +18,7 @@ module Rumale
     #   mapped_test_samples = kpca.transform(kernel_mat_test)
     #
     # *Reference*
-    # - B. Scholkopf, A. Smola, and K-R. Muller, "Nonlinear Component Analysis as a Kernel Eigenvalue Problem," Neural Computation, Vol. 10 (5), pp. 1299--1319, 1998.
+    # - Scholkopf, B., Smola, A., and Muller, K-R., "Nonlinear Component Analysis as a Kernel Eigenvalue Problem," Neural Computation, Vol. 10 (5), pp. 1299--1319, 1998.
     class KernelPCA
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/kernel_machine/kernel_svc.rb

@@ -24,7 +24,7 @@ module Rumale
     #   results = estimator.predict(testing_kernel_matrix)
     #
     # *Reference*
-    # 1. S. Shalev-Shwartz, Y. Singer, N. Srebro, and A. Cotter, "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Mathematical Programming, vol. 127 (1), pp. 3--30, 2011.
+    # - Shalev-Shwartz, S., Singer, Y., Srebro, N., and Cotter, A., "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Mathematical Programming, vol. 127 (1), pp. 3--30, 2011.
     class KernelSVC
       include Base::BaseEstimator
       include Base::Classifier

data/lib/rumale/linear_model/elastic_net.rb

@@ -15,9 +15,9 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - S. Shalev-Shwartz and Y. Singer, "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
-    # - Y. Tsuruoka, J. Tsujii, and S. Ananiadou, "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
-    # - L. Bottou, "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
+    # - Shalev-Shwartz, S., and Singer, Y., "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
+    # - Tsuruoka, Y., Tsujii, J., and Ananiadou, S., "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
+    # - Bottou, L., "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
     class ElasticNet < BaseSGD
       include Base::Regressor
 

data/lib/rumale/linear_model/lasso.rb

@@ -15,9 +15,9 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - S. Shalev-Shwartz and Y. Singer, "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
-    # - Y. Tsuruoka, J. Tsujii, and S. Ananiadou, "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
-    # - L. Bottou, "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
+    # - Shalev-Shwartz, S., and Singer, Y., "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
+    # - Tsuruoka, Y., Tsujii, J., and Ananiadou, S., "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
+    # - Bottou, L., "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
     class Lasso < BaseSGD
       include Base::Regressor
 

data/lib/rumale/linear_model/linear_regression.rb

@@ -21,7 +21,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - L. Bottou, "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
+    # - Bottou, L., "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
     class LinearRegression < BaseSGD
       include Base::Regressor
 

data/lib/rumale/linear_model/logistic_regression.rb

@@ -20,9 +20,9 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - S. Shalev-Shwartz, Y. Singer, N. Srebro, and A. Cotter, "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Mathematical Programming, vol. 127 (1), pp. 3--30, 2011.
-    # - Y. Tsuruoka, J. Tsujii, and S. Ananiadou, "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
-    # - L. Bottou, "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
+    # - Shalev-Shwartz, S., Singer, Y., Srebro, N., and Cotter, A., "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Mathematical Programming, vol. 127 (1), pp. 3--30, 2011.
+    # - Tsuruoka, Y., Tsujii, J., and Ananiadou, S., "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
+    # - Bottou, L., "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
     class LogisticRegression < BaseSGD
       include Base::Classifier
 

data/lib/rumale/linear_model/ridge.rb

@@ -21,7 +21,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - L. Bottou, "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
+    # - Bottou, L., "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
     class Ridge < BaseSGD
       include Base::Regressor
 

data/lib/rumale/linear_model/svc.rb

@@ -22,9 +22,9 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - S. Shalev-Shwartz and Y. Singer, "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
-    # - Y. Tsuruoka, J. Tsujii, and S. Ananiadou, "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
-    # - L. Bottou, "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
+    # - Shalev-Shwartz, S., and Singer, Y., "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
+    # - Tsuruoka, Y., Tsujii, J., and Ananiadou, S., "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
+    # - Bottou, L., "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
     class SVC < BaseSGD
       include Base::Classifier
 

data/lib/rumale/linear_model/svr.rb

@@ -19,9 +19,9 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - S. Shalev-Shwartz and Y. Singer, "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
-    # - Y. Tsuruoka, J. Tsujii, and S. Ananiadou, "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
-    # - L. Bottou, "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
+    # - Shalev-Shwartz, S., and Singer, Y., "Pegasos: Primal Estimated sub-GrAdient SOlver for SVM," Proc. ICML'07, pp. 807--814, 2007.
+    # - Tsuruoka, Y., Tsujii, J., and Ananiadou, S., "Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty," Proc. ACL'09, pp. 477--485, 2009.
+    # - Bottou, L., "Large-Scale Machine Learning with Stochastic Gradient Descent," Proc. COMPSTAT'10, pp. 177--186, 2010.
     class SVR < BaseSGD
       include Base::Regressor
 

data/lib/rumale/manifold/mds.rb

@@ -16,7 +16,7 @@ module Rumale
     #   representations = mds.fit_transform(samples)
     #
     # *Reference*
-    # - P J. F. Groenen and M. van de Velden, "Multidimensional Scaling by Majorization: A Review," J. of Statistical Software, Vol. 73 (8), 2016.
+    # - Groenen, P J. F.  and van de Velden, M., "Multidimensional Scaling by Majorization: A Review," J. of Statistical Software, Vol. 73 (8), 2016.
     class MDS
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/manifold/tsne.rb

@@ -19,8 +19,8 @@ module Rumale
     #   representations = tsne.fit_transform(samples)
     #
     # *Reference*
-    # - L. van der Maaten and G. Hinton, "Visualizing data using t-SNE," J. of Machine Learning Research, vol. 9, pp. 2579--2605, 2008.
-    # - Z. Yang, I. King, Z. Xu, and E. Oja, "Heavy-Tailed Symmetric Stochastic Neighbor Embedding," Proc. NIPS'09, pp. 2169--2177, 2009.
+    # - van der Maaten, L., and Hinton, G., "Visualizing data using t-SNE," J. of Machine Learning Research, vol. 9, pp. 2579--2605, 2008.
+    # - Yang, Z., King, I., Xu, Z., and Oja, E., "Heavy-Tailed Symmetric Stochastic Neighbor Embedding," Proc. NIPS'09, pp. 2169--2177, 2009.
     class TSNE
       include Base::BaseEstimator
       include Base::Transformer

data/lib/rumale/naive_bayes/bernoulli_nb.rb

@@ -12,7 +12,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - C D. Manning, P. Raghavan, and H. Schutze, "Introduction to Information Retrieval," Cambridge University Press., 2008.
+    # - Manning, C D., Raghavan, P., and Schutze, H., "Introduction to Information Retrieval," Cambridge University Press., 2008.
     class BernoulliNB < BaseNaiveBayes
       # Return the class labels.
       # @return [Numo::Int32] (size: n_classes)

data/lib/rumale/naive_bayes/multinomial_nb.rb

@@ -12,7 +12,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - C D. Manning, P. Raghavan, and H. Schutze, "Introduction to Information Retrieval," Cambridge University Press., 2008.
+    # - Manning, C D., Raghavan, P., and Schutze, H., "Introduction to Information Retrieval," Cambridge University Press., 2008.
     class MultinomialNB < BaseNaiveBayes
       # Return the class labels.
       # @return [Numo::Int32] (size: n_classes)

data/lib/rumale/nearest_neighbors/vp_tree.rb

@@ -11,7 +11,7 @@ module Rumale
     # This class is used internally for k-nearest neighbor estimators.
     #
     # *Reference*
-    # P N. Yianilos, "Data Structures and Algorithms for Nearest Neighbor Search in General Metric Spaces," Proc. SODA'93, pp. 311--321, 1993.
+    # - Yianilos, P N., "Data Structures and Algorithms for Nearest Neighbor Search in General Metric Spaces," Proc. SODA'93, pp. 311--321, 1993.
     class VPTree
       include Validation
       include Base::BaseEstimator

data/lib/rumale/neural_network/adam.rb

@@ -11,7 +11,7 @@ module Rumale
       # Adam is a class that implements Adam optimizer.
       #
       # *Reference*
-      # - D P. Kingma and J. Ba, "Adam: A Method for Stochastic Optimization," Proc. ICLR'15, 2015.
+      # - Kingma, D P., and Ba, J., "Adam: A Method for Stochastic Optimization," Proc. ICLR'15, 2015.
       class Adam
         include Base::BaseEstimator
 

data/lib/rumale/optimizer/ada_grad.rb

@@ -8,7 +8,7 @@ module Rumale
     # AdaGrad is a class that implements AdaGrad optimizer.
     #
     # *Reference*
-    # - J. Duchi, E Hazan, and Y. Singer, "Adaptive Subgradient Methods for Online Learning and Stochastic Optimization," J. Machine Learning Research, vol. 12, pp. 2121--2159, 2011.
+    # - Duchi, J., Hazan, E., and Singer, Y., "Adaptive Subgradient Methods for Online Learning and Stochastic Optimization," J. Machine Learning Research, vol. 12, pp. 2121--2159, 2011.
     class AdaGrad
       include Base::BaseEstimator
       include Validation

data/lib/rumale/optimizer/adam.rb

@@ -8,7 +8,7 @@ module Rumale
     # Adam is a class that implements Adam optimizer.
     #
     # *Reference*
-    # - D P. Kingma and J. Ba, "Adam: A Method for Stochastic Optimization," Proc. ICLR'15, 2015.
+    # - Kingma, D P., and Ba, J., "Adam: A Method for Stochastic Optimization," Proc. ICLR'15, 2015.
     class Adam
       include Base::BaseEstimator
       include Validation

data/lib/rumale/optimizer/nadam.rb

@@ -9,7 +9,7 @@ module Rumale
     # Nadam is a class that implements Nadam optimizer.
     #
     # *Reference*
-    # - T. Dozat, "Incorporating Nesterov Momentum into Adam," Tech. Repo. Stanford University, 2015.
+    # - Dozat, T., "Incorporating Nesterov Momentum into Adam," Tech. Repo. Stanford University, 2015.
     class Nadam
       include Base::BaseEstimator
       include Validation

data/lib/rumale/optimizer/rmsprop.rb

@@ -8,8 +8,8 @@ module Rumale
     # RMSProp is a class that implements RMSProp optimizer.
     #
     # *Reference*
-    # - I. Sutskever, J. Martens, G. Dahl, and G. Hinton, "On the importance of initialization and momentum in deep learning," Proc. ICML' 13, pp. 1139--1147, 2013.
-    # - G. Hinton, N. Srivastava, and K. Swersky, "Lecture 6e rmsprop," Neural Networks for Machine Learning, 2012.
+    # - Sutskever, I., Martens, J., Dahl, G., and Hinton, G., "On the importance of initialization and momentum in deep learning," Proc. ICML' 13, pp. 1139--1147, 2013.
+    # - Hinton, G., Srivastava, N., and Swersky, K., "Lecture 6e rmsprop," Neural Networks for Machine Learning, 2012.
     class RMSProp
       include Base::BaseEstimator
       include Validation

data/lib/rumale/optimizer/yellow_fin.rb

@@ -8,7 +8,7 @@ module Rumale
     # YellowFin is a class that implements YellowFin optimizer.
     #
     # *Reference*
-    # - J. Zhang and I. Mitliagkas, "YellowFin and the Art of Momentum Tuning," CoRR abs/1706.03471, 2017.
+    # - Zhang, J., and Mitliagkas, I., "YellowFin and the Art of Momentum Tuning," CoRR abs/1706.03471, 2017.
     class YellowFin
       include Base::BaseEstimator
       include Validation

data/lib/rumale/polynomial_model/factorization_machine_classifier.rb

@@ -19,8 +19,8 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - S. Rendle, "Factorization Machines with libFM," ACM TIST, vol. 3 (3), pp. 57:1--57:22, 2012.
-    # - S. Rendle, "Factorization Machines," Proc. ICDM'10, pp. 995--1000, 2010.
+    # - Rendle, S., "Factorization Machines with libFM," ACM TIST, vol. 3 (3), pp. 57:1--57:22, 2012.
+    # - Rendle, S., "Factorization Machines," Proc. ICDM'10, pp. 995--1000, 2010.
     class FactorizationMachineClassifier < BaseFactorizationMachine
       include Base::Classifier
 

data/lib/rumale/polynomial_model/factorization_machine_regressor.rb

@@ -17,8 +17,8 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - S. Rendle, "Factorization Machines with libFM," ACM TIST, vol. 3 (3), pp. 57:1--57:22, 2012.
-    # - S. Rendle, "Factorization Machines," Proc. ICDM'10, pp. 995--1000, 2010.
+    # - Rendle, S., "Factorization Machines with libFM," ACM TIST, vol. 3 (3), pp. 57:1--57:22, 2012.
+    # - Rendle, S., "Factorization Machines," Proc. ICDM'10, pp. 995--1000, 2010.
     class FactorizationMachineRegressor < BaseFactorizationMachine
       include Base::Regressor
 

data/lib/rumale/probabilistic_output.rb

@@ -12,8 +12,8 @@ module Rumale
   #   probs = 1 / (Numo::NMath.exp(params[0] * df + params[1]) + 1)
   #
   # *Reference*
-  # 1. J C. Platt, "Probabilistic Outputs for Support Vector Machines and Comparisons to Regularized Likelihood Methods," Adv. Large Margin Classifiers, pp. 61--74, 2000.
-  # 1. H-T Lin, C-J Lin, and R C.Weng, "A Note on Platt's Probabilistic Outputs for Support Vector Machines," J. Machine Learning, Vol. 63 (3), pp. 267--276, 2007.
+  # - Platt, J C., "Probabilistic Outputs for Support Vector Machines and Comparisons to Regularized Likelihood Methods," Adv. Large Margin Classifiers, pp. 61--74, 2000.
+  # - Lin, H-T., Lin, C-J., and Weng, R C., "A Note on Platt's Probabilistic Outputs for Support Vector Machines," J. Machine Learning, Vol. 63 (3), pp. 267--276, 2007.
   module ProbabilisticOutput
     class << self
       # Fit the probabilistic model for binary SVM outputs.

data/lib/rumale/tree/extra_tree_classifier.rb

@@ -14,7 +14,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - P. Geurts, D. Ernst, and L. Wehenkel, "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
+    # - Geurts, P., Ernst, D., and Wehenkel, L., "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
     class ExtraTreeClassifier < DecisionTreeClassifier
       # Return the class labels.
       # @return [Numo::Int32] (size: n_classes)

data/lib/rumale/tree/extra_tree_regressor.rb

@@ -14,7 +14,7 @@ module Rumale
     #   results = estimator.predict(testing_samples)
     #
     # *Reference*
-    # - P. Geurts, D. Ernst, and L. Wehenkel, "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
+    # - Geurts, P., Ernst, D., and Wehenkel, L., "Extremely randomized trees," Machine Learning, vol. 63 (1), pp. 3--42, 2006.
     class ExtraTreeRegressor < DecisionTreeRegressor
       # Return the importance for each feature.
       # @return [Numo::DFloat] (size: n_features)

data/lib/rumale/tree/gradient_tree_regressor.rb

@@ -10,11 +10,10 @@ module Rumale
     # GradientTreeRegressor is a class that implements decision tree for regression with exact gredy algorithm.
     # This class is used internally for estimators with gradient tree boosting.
     #
-    # *reference*
-    # - J H. Friedman, "Greedy Function Approximation: A Gradient Boosting Machine," Annals of Statistics, 29 (5), pp. 1189--1232, 2001.
-    # - J H. Friedman, "Stochastic Gradient Boosting," Computational Statistics and Data Analysis, 38 (4), pp. 367--378, 2002.
-    # - T. Chen and C. Guestrin, "XGBoost: A Scalable Tree Boosting System,"  Proc. KDD'16, pp. 785--794, 2016.
-    #
+    # *Reference*
+    # - Friedman, J H., "Greedy Function Approximation: A Gradient Boosting Machine," Annals of Statistics, 29 (5), pp. 1189--1232, 2001.
+    # - Friedman, J H., "Stochastic Gradient Boosting," Computational Statistics and Data Analysis, 38 (4), pp. 367--378, 2002.
+    # - Chen, T., and Guestrin, C., "XGBoost: A Scalable Tree Boosting System,"  Proc. KDD'16, pp. 785--794, 2016.
     class GradientTreeRegressor
       include Base::BaseEstimator
       include Base::Regressor

data/lib/rumale/version.rb

@@ -3,5 +3,5 @@
 # Rumale is a machine learning library in Ruby.
 module Rumale
   # The version of Rumale you are using.
-  VERSION = '0.18.5'
+  VERSION = '0.18.6'
 end

data/rumale.gemspec

@@ -44,17 +44,7 @@ Gem::Specification.new do |spec|
     'bug_tracker_uri' => 'https://github.com/yoshoku/rumale/issues'
   }
 
-  spec.required_ruby_version = '>= 2.3'
-
   spec.add_runtime_dependency 'numo-narray', '>= 0.9.1'
-  spec.add_runtime_dependency 'mopti', '~> 0.1'
-  spec.add_runtime_dependency 'mmh3', '~> 0.1'
-
-  spec.add_development_dependency 'bundler', '~> 2.0'
-  spec.add_development_dependency 'coveralls', '~> 0.8'
-  spec.add_development_dependency 'numo-linalg', '>= 0.1.4'
-  spec.add_development_dependency 'parallel', '>= 1.17.0'
-  spec.add_development_dependency 'rake', '~> 12.0'
-  spec.add_development_dependency 'rake-compiler', '~> 1.0'
-  spec.add_development_dependency 'rspec', '~> 3.0'
+  spec.add_runtime_dependency 'mopti', '>= 0.1.0'
+  spec.add_runtime_dependency 'mmh3', '>= 0.1.0'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rumale
 version: !ruby/object:Gem::Version
-  version: 0.18.5
+  version: 0.18.6
 platform: ruby
 authors:
 - yoshoku
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2020-04-18 00:00:00.000000000 Z
+date: 2020-05-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: numo-narray
@@ -26,130 +26,32 @@ dependencies:
         version: 0.9.1
 - !ruby/object:Gem::Dependency
   name: mopti
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.1'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.1'
-- !ruby/object:Gem::Dependency
-  name: mmh3
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.1'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.1'
-- !ruby/object:Gem::Dependency
-  name: bundler
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '2.0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '2.0'
-- !ruby/object:Gem::Dependency
-  name: coveralls
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.8'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.8'
-- !ruby/object:Gem::Dependency
-  name: numo-linalg
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: 0.1.4
-  type: :development
+        version: 0.1.0
+  type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: 0.1.4
+        version: 0.1.0
 - !ruby/object:Gem::Dependency
-  name: parallel
+  name: mmh3
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: 1.17.0
-  type: :development
+        version: 0.1.0
+  type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: 1.17.0
-- !ruby/object:Gem::Dependency
-  name: rake
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '12.0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '12.0'
-- !ruby/object:Gem::Dependency
-  name: rake-compiler
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '1.0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '1.0'
-- !ruby/object:Gem::Dependency
-  name: rspec
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '3.0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '3.0'
+        version: 0.1.0
 description: |
   Rumale is a machine learning library in Ruby.
   Rumale provides machine learning algorithms with interfaces similar to Scikit-Learn in Python.
@@ -330,7 +232,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '2.3'
+      version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="