rubystats 0.2.3 → 0.2.4

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 9002f153bddfc7d2089ad357dd7eb2ded0580315
+  data.tar.gz: 6ee9d7ac4a874ce488f09b13fd52d41b34c26de8
+SHA512:
+  metadata.gz: b960257b9ba3aa6bbf0507db971b0a8a069c8baa10c83727b52f94a939b20dbfa52966c74c184b1daebde3f2d53be990237d17cc6248b1dfb394a03d8ad4c933
+  data.tar.gz: b42484ba551d47356f2345fe4119a8e81768ccff8d6e40077f5243e4137fddb70230dd66c75e4a3a1db1f78050cc703264ed6803c0ad3cc81b90ac1c2000d198

data/.gitignore

@@ -0,0 +1,19 @@
+.rvmrc
+*.gem
+*.rbc
+.bundle
+.config
+coverage
+InstalledFiles
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp
+
+# YARD artifacts
+.yardoc
+_yardoc
+doc/

data/.travis.yml

@@ -0,0 +1,10 @@
+sudo: false
+cache: bundler
+language: ruby
+before_script:
+  - 'echo ''gem: --no-ri --no-rdoc'' > ~/.gemrc' # skip installing docs for gems
+script: 'bundle exec rake test'
+rvm:
+  - 2.0.0
+  - 2.1.0
+  - 2.2.0

data/Gemfile

@@ -0,0 +1,3 @@
+source 'http://rubygems.org'
+
+gemspec

data/Rakefile

@@ -1,48 +1,15 @@
-# -*- ruby -*-
-
 require 'rubygems'
-require 'hoe'
-$:.unshift(File.dirname(__FILE__) + "/lib")
-require 'rubystats'
-#require './lib/rubystats.rb'
-
-Hoe.new('rubystats', Rubystats::VERSION) do |p|
-  p.name = "rubystats"
-  p.author = "Bryan Donovan - http://www.bryandonovan.com"
-  p.email = "b.dondo+rubyforge@gmail.com"
-  p.description = "Ruby Stats is a port of the statistics libraries from PHPMath. Probability distributions include binomial, beta, and normal distributions with PDF, CDF and inverse CDF as well as Fisher's Exact Test."
-  p.summary = "Port of PHPMath to Ruby"
-  p.url = "http://rubyforge.org/projects/rubystats/"
-  p.changes = p.paragraphs_of('History.txt', 0..1).join("\n\n")
-  p.remote_rdoc_dir = '' # Release to root
-end
-
-desc "Run all tests"
-task :test  do 
-  Rake::TestTask.new("test") do |t|
-    t.test_files = FileList['test/tc*.rb']
-    t.verbose = false
-  end
-end
-
-#Use Allison template if available
-ALLISON = "/opt/local/lib/ruby/gems/1.8/gems/allison-2.0.3/lib/allison.rb"
+require 'bundler'
+require 'rake'
+require 'rake/testtask'
 
-Rake::RDocTask.new do |rd|  
-  rd.main = "README.txt"  
-  rd.rdoc_dir = "doc"  
-  rd.rdoc_files.include(  
-      "README.txt",  
-      "History.txt",  
-      "Manifest.txt",  
-      "lib/**/*.rb",
-      "examples/**/*.rb",
-      "test/**/*.rb")  
-  rd.title = "Rubystats RDoc"  
+Bundler::GemHelper.install_tasks
 
-  rd.options << '-S' # inline source  
+desc 'Default: run the specs and features.'
+task :default => 'test'
 
-  rd.template = ALLISON if File.exist?(ALLISON)  
-end  
-
-# vim: syntax=Ruby
+Rake::TestTask.new('test') do |t|
+  t.libs << 'test'
+  t.test_files = FileList['test/tc*.rb']
+  t.verbose = true
+end

data/lib/rubystats.rb

@@ -1,10 +1,12 @@
-module Rubystats
-  VERSION = '0.2.3'
-end
-
 require 'rubystats/normal_distribution'
 require 'rubystats/binomial_distribution'
 require 'rubystats/beta_distribution'
 require 'rubystats/fishers_exact_test'
 require 'rubystats/exponential_distribution'
+require 'rubystats/version'
+
+module Rubystats
+
+end
+
 include Rubystats

data/lib/rubystats/normal_distribution.rb

@@ -13,7 +13,7 @@ module Rubystats
     def initialize(mu=0.0, sigma=1.0)
       @mean = mu
       if sigma <= 0.0
-        return "error"
+        raise "error, invalid sigma #{sigma}, should be > 0"
       end
       @stdev = sigma
       @variance = sigma**2

data/lib/rubystats/version.rb

@@ -0,0 +1,3 @@
+module Rubystats
+  VERSION = '0.2.4'
+end

data/rubystats.gemspec

@@ -0,0 +1,23 @@
+$LOAD_PATH << File.expand_path("../lib", __FILE__)
+require 'rubystats/version'
+
+Gem::Specification.new do |s|
+  s.name        = 'rubystats'
+  s.version     = Rubystats::VERSION
+  s.summary     = ''
+  s.description = "Ruby Stats is a port of the statistics libraries from PHPMath. Probability distributions include binomial, beta, and normal distributions with PDF, CDF and inverse CDF as well as Fisher's Exact Test."
+
+  s.files         = `git ls-files`.split("\n")
+  s.test_files    = `git ls-files -- Appraisals {test,spec,features,gemfiles}/*`.split("\n")
+
+  s.require_paths = ['lib']
+  s.required_ruby_version = Gem::Requirement.new(">= 1.9.2")
+
+  s.authors = ['Ilya Scharrenbroich', 'Bryan Donovan - http://www.bryandonovan.com', 'Phillip Baker']
+
+  s.homepage = 'https://github.com/phillbaker/rubystats'
+
+  s.add_development_dependency("minitest", ">= 4.2", "< 5.0")
+  s.add_development_dependency("hoe", ">= 1.7.0")
+end
+

data/test/tc_beta.rb

@@ -1,51 +1,51 @@
 $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
-require 'test/unit'
+require 'minitest/autorun'
 require 'rubystats/beta_distribution'
 
-class TestBeta < Test::Unit::TestCase
-	def test_simple
-		p = 12
-		q = 59
-		beta = Rubystats::BetaDistribution.new(p,q)
-		assert_equal("0.169014084507042", beta.mean.to_s)
-		assert_equal("0.0441664031038187", beta.standard_deviation.to_s)
-		assert_equal("6.26075815849967", beta.pdf(0.2).to_s)
-		assert_equal("0.999999997766913", beta.cdf(0.50).to_s)
-		assert_equal("0.102003194113565", beta.icdf(0.05).to_s)
+class TestBeta < MiniTest::Unit::TestCase
+  def test_simple
+    p = 12
+    q = 59
+    beta = Rubystats::BetaDistribution.new(p,q)
+    assert_equal("0.16901408450704225", beta.mean.to_s)
+    assert_equal("0.04416640310381873", beta.standard_deviation.to_s)
+    assert_equal("6.260758158499666", beta.pdf(0.2).to_s)
+    assert_equal("0.9999999977669126", beta.cdf(0.50).to_s)
+    assert_equal("0.10200319411356515", beta.icdf(0.05).to_s)
+
+    x_vals = [0.1, 0.15, 0.2, 0.25, 0.3, 0.35]
+    p_vals = beta.pdf(x_vals)
+    c_vals = beta.cdf(x_vals)
+    expected_pvals = [ 2.83232625227534,
+      8.89978000366836,
+      6.26075815849967,
+      1.72572305993386,
+      0.234475706454223,
+      0.0173700433944934]
+    expected_cvals = [0.0440640755091473,
+      0.356009606171447,
+      0.768319101921981,
+      0.956058132801147,
+      0.995358286711105,
+      0.99971672771575]
 
-		x_vals = [0.1, 0.15, 0.2, 0.25, 0.3, 0.35]
-		p_vals = beta.pdf(x_vals)
-		c_vals = beta.cdf(x_vals)
-		expected_pvals = [ 2.83232625227534,
-			8.89978000366836,
-			6.26075815849967,
-			1.72572305993386,
-			0.234475706454223,
-			0.0173700433944934]
-		expected_cvals = [0.0440640755091473,
-			0.356009606171447,
-			0.768319101921981,
-			0.956058132801147,
-			0.995358286711105,
-			0.99971672771575]
-     
     0.upto(x_vals.size - 1) do |i|
       assert_in_delta expected_pvals[i], p_vals[i], 0.00000001
       assert_in_delta expected_cvals[i], c_vals[i], 0.00000001
       i += 1
     end
 
-		x_vals.each do |x|
-			cdf = beta.cdf(x)
-			inv_cdf = beta.icdf(cdf)
-			assert_in_delta(x, inv_cdf, 0.00000001)
-		end
-	end
+    x_vals.each do |x|
+      cdf = beta.cdf(x)
+      inv_cdf = beta.icdf(cdf)
+      assert_in_delta(x, inv_cdf, 0.00000001)
+    end
+  end
 
   def test_low_p_and_q_values
-		p = 1.5 
-		q = 1.0 
-		beta = Rubystats::BetaDistribution.new(p,q)
+    p = 1.5
+    q = 1.0
+    beta = Rubystats::BetaDistribution.new(p,q)
 
     #from PHPExcel/PHPMath output
     expected_icdf_vals = [
@@ -60,41 +60,41 @@ class TestBeta < Test::Unit::TestCase
     end
   end
 
-	def test_control_limits
-		trials = 50
-		alpha = 0.05
-		p = 10
-		lcl = get_lower_limit(trials, alpha, p)
-		ucl = get_upper_limit(trials, alpha, p)
-		assert_equal("0.112721613414076",lcl.to_s)
-		assert_equal("0.315596061420013",ucl.to_s)
+  def test_control_limits
+    trials = 50
+    alpha = 0.05
+    p = 10
+    lcl = get_lower_limit(trials, alpha, p)
+    ucl = get_upper_limit(trials, alpha, p)
+    assert_equal("0.1127216134140763",lcl.to_s)
+    assert_equal("0.3155960614200132",ucl.to_s)
 
-		trials = 210 
-		alpha = 0.10
-		p = 47 
-		lcl = get_lower_limit(trials, alpha, p)
-		ucl = get_upper_limit(trials, alpha, p)
-		assert_equal("0.186679485269901",lcl.to_s)
-		assert_equal("0.264957601783544",ucl.to_s)
-	end
+    trials = 210
+    alpha = 0.10
+    p = 47
+    lcl = get_lower_limit(trials, alpha, p)
+    ucl = get_upper_limit(trials, alpha, p)
+    assert_equal("0.18667948526990116",lcl.to_s)
+    assert_equal("0.2649576017835441",ucl.to_s)
+  end
 
-	def get_lower_limit(trials,alpha,p)
-		if p==0
-			lcl=0
-		else
-			q=trials-p+1
-			bin= Rubystats::BetaDistribution.new(p,q)
-			lcl=bin.icdf(alpha)
-		end
-		return lcl
-	end
+  def get_lower_limit(trials,alpha,p)
+    if p==0
+      lcl=0
+    else
+      q=trials-p+1
+      bin= Rubystats::BetaDistribution.new(p,q)
+      lcl=bin.icdf(alpha)
+    end
+    return lcl
+  end
 
-	def get_upper_limit(trials,alpha,p)
-		q=trials-p
-		p=p+1
-		bin= Rubystats::BetaDistribution.new(p,q)
-		ucl=bin.icdf(1-alpha)
-		return ucl
-	end
+  def get_upper_limit(trials,alpha,p)
+    q=trials-p
+    p=p+1
+    bin= Rubystats::BetaDistribution.new(p,q)
+    ucl=bin.icdf(1-alpha)
+    return ucl
+  end
 
 end

data/test/tc_binomial.rb

@@ -1,22 +1,22 @@
 $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
-require 'test/unit'
+require 'minitest/autorun'
 require 'rubystats/binomial_distribution'
 
-class TestBinomial < Test::Unit::TestCase
-	def test_simple
-		t = 100 
-		f = 7 
-		p = 0.05
+class TestBinomial < MiniTest::Unit::TestCase
+  def test_simple
+    t = 100
+    f = 7
+    p = 0.05
 
-		bin = Rubystats::BinomialDistribution.new(t,p)
-		cdf = bin.cdf(f)
-		pdf = bin.pdf(f)
-		mean = bin.mean
-		inv_cdf = bin.icdf(cdf)
+    bin = Rubystats::BinomialDistribution.new(t,p)
+    cdf = bin.cdf(f)
+    pdf = bin.pdf(f)
+    mean = bin.mean
+    inv_cdf = bin.icdf(cdf)
 
-		assert_in_delta(0.10602553736479, pdf, 0.00000000000001 )
-		assert_in_delta(0.87203952137960, cdf, 0.00000000000001)
-		assert_equal("5.0",mean.to_s)
-		assert_equal(f,inv_cdf)
-	end
+    assert_in_delta(0.10602553736479, pdf, 0.00000000000001 )
+    assert_in_delta(0.87203952137960, cdf, 0.00000000000001)
+    assert_equal("5.0",mean.to_s)
+    assert_equal(f,inv_cdf)
+  end
 end

data/test/tc_exponential.rb

@@ -1,8 +1,8 @@
 $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
-require 'test/unit'
+require 'minitest/autorun'
 require 'rubystats/exponential_distribution'
 
-class TestExponential < Test::Unit::TestCase
+class TestExponential < MiniTest::Unit::TestCase
   def test_simple
     lmbda = 1
     expd = Rubystats::ExponentialDistribution.new(lmbda)
@@ -16,7 +16,7 @@ class TestExponential < Test::Unit::TestCase
     rngs = []
     rngsum = 0
     n = 5000
-    n.times do 
+    n.times do
       rng = expd.rng
       rngs << rng
       rngsum += rng

data/test/tc_fisher.rb

@@ -1,20 +1,20 @@
 $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
-require 'test/unit'
+require 'minitest/autorun'
 require 'rubystats/fishers_exact_test'
 
-class TestFisher < Test::Unit::TestCase
-	def test_simple
-		tested1 = 20
-		tested2 = 30
-		f1 = 10
-		f2 = 10
-		t1 = tested1 - f1
-		t2 = tested2 - f2
-		fet = Rubystats::FishersExactTest.new
-		fisher = fet.calculate(t1,t2,f1,f2)
+class TestFisher < MiniTest::Unit::TestCase
+  def test_simple
+    tested1 = 20
+    tested2 = 30
+    f1 = 10
+    f2 = 10
+    t1 = tested1 - f1
+    t2 = tested2 - f2
+    fet = Rubystats::FishersExactTest.new
+    fisher = fet.calculate(t1,t2,f1,f2)
 
-		assert_equal("0.188301375769922",fisher[:left].to_s)
-		assert_equal("0.929481131661052",fisher[:right].to_s)
-		assert_equal("0.257549242810992",fisher[:twotail].to_s)
-	end
+    assert_equal("0.18830137576992229",fisher[:left].to_s)
+    assert_equal("0.9294811316610517",fisher[:right].to_s)
+    assert_equal("0.2575492428109919",fisher[:twotail].to_s)
+  end
 end

data/test/tc_norm.rb

@@ -1,8 +1,8 @@
 $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
-require 'test/unit'
+require 'minitest/autorun'
 require 'rubystats/normal_distribution'
 
-class TestNormal < Test::Unit::TestCase
+class TestNormal < MiniTest::Unit::TestCase
   def test_simple
 
     norm = Rubystats::NormalDistribution.new(10,2)

data/test/tc_require_all.rb

@@ -4,16 +4,16 @@ $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
 # test that we can use old api that wasn't namespaced
 #
 
-require 'test/unit'
+require 'minitest/autorun'
 require 'rubystats'
 
-class TestNormal < Test::Unit::TestCase
+class TestNormal < MiniTest::Unit::TestCase
   def test_simple
     norm = NormalDistribution.new(10,2)
     cdf = norm.cdf(11)
 
-    assert_equal("0.691462461274013",cdf.to_s)
-    assert_not_nil(norm.rng)
+    assert_equal("0.6914624612740131",cdf.to_s)
+    refute_nil(norm.rng)
 
     expd = ExponentialDistribution.new(2)
   end

data/test/ts_stats.rb

@@ -1,4 +1,4 @@
-require 'test/unit'
+require 'minitest/autorun'
 require 'tc_fisher'
 require 'tc_binomial'
 require 'tc_beta'

metadata

@@ -1,41 +1,65 @@
---- !ruby/object:Gem::Specification 
+--- !ruby/object:Gem::Specification
 name: rubystats
-version: !ruby/object:Gem::Version 
-  version: 0.2.3
+version: !ruby/object:Gem::Version
+  version: 0.2.4
 platform: ruby
-authors: 
+authors:
+- Ilya Scharrenbroich
 - Bryan Donovan - http://www.bryandonovan.com
+- Phillip Baker
 autorequire: 
 bindir: bin
 cert_chain: []
-
-date: 2008-07-06 00:00:00 -07:00
-default_executable: 
-dependencies: 
-- !ruby/object:Gem::Dependency 
+date: 2016-02-01 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: minitest
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '4.2'
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: '5.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '4.2'
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: '5.0'
+- !ruby/object:Gem::Dependency
   name: hoe
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 1.7.0
   type: :development
-  version_requirement: 
-  version_requirements: !ruby/object:Gem::Requirement 
-    requirements: 
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
     - - ">="
-      - !ruby/object:Gem::Version 
+      - !ruby/object:Gem::Version
         version: 1.7.0
-    version: 
-description: Ruby Stats is a port of the statistics libraries from PHPMath. Probability distributions include binomial, beta, and normal distributions with PDF, CDF and inverse CDF as well as Fisher's Exact Test.
-email: b.dondo+rubyforge@gmail.com
+description: Ruby Stats is a port of the statistics libraries from PHPMath. Probability
+  distributions include binomial, beta, and normal distributions with PDF, CDF and
+  inverse CDF as well as Fisher's Exact Test.
+email: 
 executables: []
-
 extensions: []
-
-extra_rdoc_files: 
-- History.txt
-- Manifest.txt
-- README.txt
-files: 
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".travis.yml"
+- Gemfile
 - History.txt
 - Manifest.txt
-- README.txt
+- README.rdoc
 - Rakefile
 - examples/beta.rb
 - examples/binomial.rb
@@ -51,6 +75,8 @@ files:
 - lib/rubystats/modules.rb
 - lib/rubystats/normal_distribution.rb
 - lib/rubystats/probability_distribution.rb
+- lib/rubystats/version.rb
+- rubystats.gemspec
 - test/tc_beta.rb
 - test/tc_binomial.rb
 - test/tc_exponential.rb
@@ -58,32 +84,34 @@ files:
 - test/tc_norm.rb
 - test/tc_require_all.rb
 - test/ts_stats.rb
-has_rdoc: true
-homepage: http://rubyforge.org/projects/rubystats/
+homepage: https://github.com/phillbaker/rubystats
+licenses: []
+metadata: {}
 post_install_message: 
-rdoc_options: 
-- --main
-- README.txt
-require_paths: 
+rdoc_options: []
+require_paths:
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement 
-  requirements: 
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
   - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
-  version: 
-required_rubygems_version: !ruby/object:Gem::Requirement 
-  requirements: 
+    - !ruby/object:Gem::Version
+      version: 1.9.2
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
   - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
-  version: 
+    - !ruby/object:Gem::Version
+      version: '0'
 requirements: []
-
-rubyforge_project: rubystats
-rubygems_version: 1.2.0
+rubyforge_project: 
+rubygems_version: 2.4.3
 signing_key: 
-specification_version: 2
-summary: Port of PHPMath to Ruby
-test_files: []
-
+specification_version: 4
+summary: ''
+test_files:
+- test/tc_beta.rb
+- test/tc_binomial.rb
+- test/tc_exponential.rb
+- test/tc_fisher.rb
+- test/tc_norm.rb
+- test/tc_require_all.rb
+- test/ts_stats.rb