rubyfca 0.2.10 → 0.2.11

data/.gitignore

@@ -1,5 +1,21 @@
-*.sw?
-.DS_Store
+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
 coverage
-rdoc
+doc/
+lib/bundler/man
 pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp
+.DS_Store
+*.bak
+*.~
+*.log

data/Gemfile

@@ -0,0 +1,4 @@
+source 'https://rubygems.org'
+# gem "trollop"
+# Specify your gem's dependencies in ..gemspec
+gemspec

data/LICENSE

@@ -1,4 +1,4 @@
-Copyright (c) 2010 Yoichiro Hasebe
+Copyright (c) 2009 Yoichiro Hasebe
 
 Permission is hereby granted, free of charge, to any person obtaining
 a copy of this software and associated documentation files (the

data/README.rdoc

@@ -4,7 +4,7 @@ Command line tool for Formal Concept Analysis (FCA) written in Ruby.
 
 == Features
 
-* Convert a Conexp's CXT file and generate a Graphviz DOT file, or a PNG/JPG/EPS image file.
+* Convert a Conexp's CXT or CSV file and generate a Graphviz DOT file, or a PNG/JPG/EPS image file.
 * Adopt the Ganter algorithm (through its Perl implementation of Fcastone by Uta Priss).
 
 == Installation
@@ -33,7 +33,6 @@ Install the gem:
 
 == ToDo
 
-* Multiple input formats (such as CSV)
 * Database connection capability
 
 == Links
@@ -42,4 +41,4 @@ under construction
 
 == Copyright
 
-Copyright (c) 2009 Yoichiro Hasebe and Kow Kuroda. See LICENSE for details.
+Copyright (c) 2009-2012 Yoichiro Hasebe and Kow Kuroda. See LICENSE for details.

data/Rakefile

@@ -1,56 +1,2 @@
-require 'rubygems'
-require 'rake'
-
-begin
-  require 'jeweler'
-  Jeweler::Tasks.new do |gem|
-    gem.name = "rubyfca"
-    gem.summary = %Q{Command line Formal Concept Ananlysis (FCA) tool written in Ruby}
-    gem.description = %Q{Command line Formal Concept Ananlysis (FCA) tool written in Ruby}
-    gem.email = "yohasebe@gmail.com"
-    gem.homepage = "http://github.com/yohasebe/rubyfca"
-    gem.authors = ["Yoichiro Hasebe"]
-    gem.add_development_dependency "thoughtbot-shoulda"
-    # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
-  end
-rescue LoadError
-  puts "Jeweler (or a dependency) not available. Install it with: sudo gem install jeweler"
-end
-
-require 'rake/testtask'
-Rake::TestTask.new(:test) do |test|
-  test.libs << 'lib' << 'test'
-  test.pattern = 'test/**/*_test.rb'
-  test.verbose = true
-end
-
-begin
-  require 'rcov/rcovtask'
-  Rcov::RcovTask.new do |test|
-    test.libs << 'test'
-    test.pattern = 'test/**/*_test.rb'
-    test.verbose = true
-  end
-rescue LoadError
-  task :rcov do
-    abort "RCov is not available. In order to run rcov, you must: sudo gem install spicycode-rcov"
-  end
-end
-
-task :test => :check_dependencies
-
-task :default => :test
-
-require 'rake/rdoctask'
-Rake::RDocTask.new do |rdoc|
-  if File.exist?('VERSION')
-    version = File.read('VERSION')
-  else
-    version = ""
-  end
-
-  rdoc.rdoc_dir = 'rdoc'
-  rdoc.title = "rubyfca #{version}"
-  rdoc.rdoc_files.include('README*')
-  rdoc.rdoc_files.include('lib/**/*.rb')
-end
+#!/usr/bin/env rake
+require "bundler/gem_tasks"

data/bin/rubyfca

@@ -2,14 +2,12 @@
 # -*- coding: utf-8 -*-
 
 $:.unshift File.join(File.dirname(__FILE__), '..', 'lib')
-require 'trollop'
 require 'rubyfca'
-require 'ruby_graphviz'
 
 ################ parse options ##########
 
 opts = Trollop::options do
-  version = File.read(File.dirname(__FILE__) + "/../VERSION")
+  version RubyFCA::VERSION
   banner <<-EOS
   
 RubuFCA converts Conexp CXT data to Graphviz dot format.
@@ -79,7 +77,7 @@ end
 #
 begin
   ctxt = FormalContext.new(inputdata, input_type, !opts[:full])
-  ctxt.calculate
+  ctxt.calcurate
 # rescue => e
 #   puts e
 #   showerror("Source data may have problems. Process aborted.", 1)

data/lib/rubyfca.rb

@@ -1,13 +1,18 @@
+#!/usr/bin/env ruby
+# -*- coding: utf-8 -*-
+
 ## lib/rubyfca.rb -- Formal Concept Analysis tool in Ruby
 ## Author::    Yoichiro Hasebe (mailto: yohasebe@gmail.com)
 ##             Kow Kuroda (mailto: kuroda@nict.go.jp)   
-## Copyright:: Copyright 2010 Yoichiro Hasebe and Kow Kuroda
+## Copyright:: Copyright 2009 Yoichiro Hasebe and Kow Kuroda
 ## License::   GNU GPL version 3
 
-# -*- coding: utf-8 -*-
+$: << File.dirname(__FILE__) + "/rubyfca"
 
 require 'csv'
 require 'ruby_graphviz'
+require 'version'
+require 'trollop'
 
 private
 
@@ -45,6 +50,7 @@ class FormalContext
     if input.size == 0
       showerror("File is empty", 1)
     end
+    input.gsub!(" ", "&nbsp;")
     begin
       case mode
       when /cxt\z/
@@ -85,9 +91,10 @@ class FormalContext
   
   def remove_blank(input)
     blank_removed = ""
-    input.each do |line|
-      unless /^\s*$/ =~ line
-        blank_removed << line
+    input.split("\n").each do |line|
+      line = line.strip
+      unless /\A\s*\z/ =~ line
+        blank_removed << line + "\n"
       end
     end
     blank_removed
@@ -101,7 +108,7 @@ class FormalContext
   end
   
   ## Apply a formal concept analysis on the matrix
-  def calculate 
+  def calcurate 
     @concepts, @extM, @intM = ganter_alg(@matrix)
     @relM, @reltrans, @rank = create_rel(@intM)
     @gammaM, @muM = gammaMu(@extM, @intM, @matrix)

data/lib/{ruby_graphviz.rb → rubyfca/ruby_graphviz.rb}

@@ -1,6 +1,9 @@
+#!/usr/bin/env ruby
+# -*- coding: utf-8 -*-
+
 ## lib/ruby_graphviz.rb -- graphviz dot generator library
 ## Author::    Yoichiro Hasebe (mailto: yohasebe@gmail.com)
-## Copyright:: Copyright 2010 Yoichiro Hasebe
+## Copyright:: Copyright 2009 Yoichiro Hasebe
 ## License::   GNU GPL version 3
 
 class RubyGraphviz

data/lib/{trollop.rb → rubyfca/trollop.rb}

@@ -413,7 +413,7 @@ class Parser
 
   ## Print the help message to +stream+.
   def educate stream=$stdout
-    width # just calculate it now; otherwise we have to be careful not to
+    width # just calcurate it now; otherwise we have to be careful not to
           # call this unless the cursor's at the beginning of a line.
 
     left = {}

data/lib/rubyfca/version.rb

@@ -0,0 +1,3 @@
+module RubyFCA
+  VERSION = "0.2.11"
+end

data/rubyfca.gemspec

@@ -1,60 +1,17 @@
-# Generated by jeweler
-# DO NOT EDIT THIS FILE DIRECTLY
-# Instead, edit Jeweler::Tasks in Rakefile, and run the gemspec command
 # -*- encoding: utf-8 -*-
+require File.expand_path('../lib/rubyfca/version', __FILE__)
 
-Gem::Specification.new do |s|
-  s.name = %q{rubyfca}
-  s.version = "0.2.10"
+Gem::Specification.new do |gem|
+  gem.authors       = ["Yoichiro Hasebe", "Kow Kuroda"]
+  gem.email         = ["yohasebe@gmail.com"]
+  gem.summary         = %q{Command line FCA tool written in Ruby}  
+  gem.description     = %q{Command line Formal Concept Analysis (FCA) tool written in Ruby}  
+  gem.homepage        = "http://github.com/yohasebe/rubyfca"  
 
-  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
-  s.authors = ["Yoichiro Hasebe"]
-  s.date = %q{2010-01-17}
-  s.default_executable = %q{rubyfca}
-  s.description = %q{Command line Formal Concept Ananlysis (FCA) tool written in Ruby}
-  s.email = %q{yohasebe@gmail.com}
-  s.executables = ["rubyfca"]
-  s.extra_rdoc_files = [
-    "LICENSE",
-     "README.rdoc"
-  ]
-  s.files = [
-    ".document",
-     ".gitignore",
-     "LICENSE",
-     "README.rdoc",
-     "Rakefile",
-     "VERSION",
-     "bin/rubyfca",
-     "lib/ruby_graphviz.rb",
-     "lib/rubyfca.rb",
-     "lib/trollop.rb",
-     "rubyfca.gemspec",
-     "test/rubyfca_test.rb",
-     "test/test_data.cxt",
-     "test/test_helper.rb"
-  ]
-  s.homepage = %q{http://github.com/yohasebe/rubyfca}
-  s.rdoc_options = ["--charset=UTF-8"]
-  s.require_paths = ["lib"]
-  s.rubygems_version = %q{1.3.5}
-  s.summary = %q{Command line Formal Concept Ananlysis (FCA) tool written in Ruby}
-  s.test_files = [
-    "test/rubyfca_test.rb",
-     "test/test_helper.rb"
-  ]
-
-  if s.respond_to? :specification_version then
-    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
-    s.specification_version = 3
-
-    if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
-      s.add_development_dependency(%q<thoughtbot-shoulda>, [">= 0"])
-    else
-      s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
-    end
-  else
-    s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
-  end
+  gem.files         = `git ls-files`.split($\)
+  gem.executables   = gem.files.grep(%r{^bin/}).map{ |f| File.basename(f) }
+  gem.test_files    = gem.files.grep(%r{^(test|spec|features)/})
+  gem.name          = "rubyfca"  
+  gem.require_paths = ["lib"]
+  gem.version       = RubyFCA::VERSION  
 end
-

data/test/test_data.csv

@@ -0,0 +1,7 @@
+       ,Ostrich, Sparrow, Eagle, Lion, Bonobo, Human being
+bird   ,X,X,X,.,.,.
+mammal ,.,.,.,X,X,X
+ape    ,.,.,.,.,X,X
+flying ,.,X,X,.,.,.
+preying,.,.,X,X,.,.
+talking,.,.,.,.,.,X

data/test/test_data.cxt

@@ -8,18 +8,18 @@ Sparrow
 Eagle
 Lion
 Bonobo
-Human
+Human being
 bird
 mammal
 ape
 flying
 preying
 talking
-X.....
-X..X..
-X..XX.
-.X..X.
+XXX...
+...XXX
+....XX
 .XX...
-.XX..X
+..XX..
+.....X
 
 

metadata

@@ -1,79 +1,68 @@
---- !ruby/object:Gem::Specification 
+--- !ruby/object:Gem::Specification
 name: rubyfca
-version: !ruby/object:Gem::Version 
-  version: 0.2.10
+version: !ruby/object:Gem::Version
+  version: 0.2.11
+  prerelease: 
 platform: ruby
-authors: 
+authors:
 - Yoichiro Hasebe
+- Kow Kuroda
 autorequire: 
 bindir: bin
 cert_chain: []
-
-date: 2010-01-17 00:00:00 +09:00
-default_executable: rubyfca
-dependencies: 
-- !ruby/object:Gem::Dependency 
-  name: thoughtbot-shoulda
-  type: :development
-  version_requirement: 
-  version_requirements: !ruby/object:Gem::Requirement 
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        version: "0"
-    version: 
-description: Command line Formal Concept Ananlysis (FCA) tool written in Ruby
-email: yohasebe@gmail.com
-executables: 
+date: 2012-06-05 00:00:00.000000000 Z
+dependencies: []
+description: Command line Formal Concept Analysis (FCA) tool written in Ruby
+email:
+- yohasebe@gmail.com
+executables:
 - rubyfca
 extensions: []
-
-extra_rdoc_files: 
-- LICENSE
-- README.rdoc
-files: 
+extra_rdoc_files: []
+files:
 - .document
 - .gitignore
+- Gemfile
 - LICENSE
 - README.rdoc
 - Rakefile
-- VERSION
 - bin/rubyfca
-- lib/ruby_graphviz.rb
 - lib/rubyfca.rb
-- lib/trollop.rb
+- lib/rubyfca/ruby_graphviz.rb
+- lib/rubyfca/trollop.rb
+- lib/rubyfca/version.rb
 - rubyfca.gemspec
+- rubyfca.log
 - test/rubyfca_test.rb
+- test/test_data.csv
 - test/test_data.cxt
 - test/test_helper.rb
-has_rdoc: true
 homepage: http://github.com/yohasebe/rubyfca
 licenses: []
-
 post_install_message: 
-rdoc_options: 
-- --charset=UTF-8
-require_paths: 
+rdoc_options: []
+require_paths:
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement 
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
-  version: 
-required_rubygems_version: !ruby/object:Gem::Requirement 
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
-  version: 
+required_ruby_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
 requirements: []
-
 rubyforge_project: 
-rubygems_version: 1.3.5
+rubygems_version: 1.8.10
 signing_key: 
 specification_version: 3
-summary: Command line Formal Concept Ananlysis (FCA) tool written in Ruby
-test_files: 
+summary: Command line FCA tool written in Ruby
+test_files:
 - test/rubyfca_test.rb
+- test/test_data.csv
+- test/test_data.cxt
 - test/test_helper.rb

data/VERSION

@@ -1 +0,0 @@
-0.2.10