rubydex 0.3.0 → 0.4.0

checksums.yaml

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data/README.md

@@ -75,8 +75,10 @@ location.path
 # Diagnostics
 diagnostic = graph.diagnostics.first
 diagnostic.rule
+diagnostic.rule.default_severity
 diagnostic.message
 diagnostic.location
+diagnostic.related_information
 ```
 
 ## Ractor Safety
@@ -108,7 +110,11 @@ Thread safety comes from an `RwLock` on the Rust side, **not** from Ruby's
   aliasing the Rust allocation (which would double-free on GC) or ballooning
   memory with a deep copy.
 
-## Querying with Cypher
+## Tools
+
+All built-in tools are experimental. These tools can change without deprecation warnings.
+
+### `rdx query`
 
 Rubydex exposes the indexed graph through a read-only subset of the
 [Cypher](https://opencypher.org/) query language. Only read clauses (`MATCH`,
@@ -134,21 +140,45 @@ graph = Rubydex::Graph.new
 graph.index_workspace
 graph.resolve
 
-# Parse once, render against a graph as a table or JSON string
+# Parse once, then run against a graph. `run` executes the query and returns the result set.
 query = Rubydex::Query.parse("MATCH (c:Class) RETURN c.name")
-puts query.render(graph, "table")
-puts query.render(graph, "json")
+result = query.run(graph)
+
+# Read the rows as Ruby objects, or render the same result set as a table or JSON string
+result.rows.each { |row| puts row["c.name"] }
+puts result.render("table")
+puts result.render("json")
 
 # Describe the schema
 puts Rubydex::Query.schema("table")
 ```
 
-## MCP Server (Experimental)
+### `rdx lint`
+
+Put rule files under `rubydex_linter/rules`. Each rule must inherit from `Rubydex::Linter::CustomRule`.
+
+Run the linter:
+
+```bash
+bundle exec rdx lint
+```
+
+Rubydex uses the bundle root, or the current directory when no bundle is available.
+
+Configure a rule in `rubydex.toml`:
+
+```toml
+[linter.rules.<Rule name>]
+enabled = true
+exclude = ["path_to_skip/**"]
+```
+
+### `rdx mcp`
 
 Rubydex can run as an MCP (Model Context Protocol) server, enabling AI assistants
 like Claude to semantically query your Ruby codebase.
 
-### Setup
+#### Setup
 
 1. Add Rubydex to the Ruby project you want to index:
    ```ruby
@@ -176,7 +206,7 @@ like Claude to semantically query your Ruby codebase.
    the project at startup and provides semantic code intelligence tools through
    the tools below.
 
-### Available MCP Tools
+#### Available MCP Tools
 
 | Tool | Description |
 |------|-------------|
@@ -187,6 +217,14 @@ like Claude to semantically query your Ruby codebase.
 | `get_file_declarations` | List declarations defined in a specific file |
 | `codebase_stats` | High-level statistics about the indexed codebase |
 
+## Skill Library (Experimental)
+
+Rubydex ships with a built in skill library. These skills are referenced by id by Rubydex tools (for example: `send-private-method` maps to `skills/send-private-method/SKILL.md`).
+
+The intention is for Rubydex to provide deterministic skill loading for agents. If a rule returns a skill id, the agent can then fetch the skill with `rdx skill <id>`.
+
+This removes the need for agents to load a large number of possibly unrelated skill descriptions when they may or may not be necessary. The information only surfaces if there is a verified violation to fix, and it only needs to be loaded once, rather than inlining it on every violation in every run of the tool (the common pattern for linters and analyzers).
+
 ## Contributing
 
 See [the contributing documentation](CONTRIBUTING.md).

data/THIRD_PARTY_LICENSES.html

@@ -50,7 +50,7 @@
 
         <h2>Overview of licenses:</h2>
         <ul class="licenses-overview">
-            <li><a href="#Apache-2.0">Apache License 2.0</a> (116)</li>
+            <li><a href="#Apache-2.0">Apache License 2.0</a> (119)</li>
             <li><a href="#Unicode-3.0">Unicode License v3</a> (19)</li>
             <li><a href="#MIT">MIT License</a> (17)</li>
             <li><a href="#BSD-2-Clause">BSD 2-Clause &quot;Simplified&quot; License</a> (2)</li>
@@ -277,6 +277,242 @@
    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and
    limitations under the License.
+</pre>
+            </li>
+            <li class="license">
+                <h3 id="Apache-2.0">Apache License 2.0</h3>
+                <h4>Used by:</h4>
+                <ul class="license-used-by">
+                    <li><a
+                            href=" https://github.com/sunfishcode/linux-raw-sys ">linux-raw-sys
+                            0.9.4</a></li>
+                    <li><a
+                            href=" https://github.com/bytecodealliance/rustix ">rustix
+                            1.0.8</a></li>
+                    <li><a
+                            href=" https://github.com/bytecodealliance/wasi-rs ">wasi
+                            0.14.2+wasi-0.2.4</a></li>
+                </ul>
+                <pre class="license-text">
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
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 </pre>
             </li>
             <li class="license">
@@ -2810,7 +3046,7 @@ SOFTWARE.
                 <ul class="license-used-by">
                     <li><a
                             href=" https://github.com/Shopify/cypher-parser ">cypher-parser
-                            0.2.0</a></li>
+                            0.8.1</a></li>
                 </ul>
                 <pre class="license-text">The MIT License (MIT)
 

data/exe/rdx

@@ -3,153 +3,6 @@
 
 $LOAD_PATH.unshift(File.expand_path("../lib", __dir__))
 
-require "optparse"
+require "rubydex/cli"
 
-USAGE = <<~TEXT
-  Usage: rdx <command> [options]
-
-  Commands:
-    query <CYPHER>   Run a Cypher query against the workspace graph and print the result.
-                     Use `query --schema` to describe the queryable schema (labels,
-                     relationships, properties) without indexing the workspace.
-    console          Open an interactive session with a populated graph for the current workspace
-    mcp [PATH]       Run the MCP server for AI assistants (workspace defaults to the current dir)
-    help             Show this help message
-
-  Run `rdx <command> --help` for command-specific options.
-TEXT
-
-def abort_with_usage(message)
-  warn(message)
-  warn("")
-  warn(USAGE)
-  exit(1)
-end
-
-# Top-level --version / --help / bare invocation, handled before command dispatch. Each branch
-# performs its action and reports whether it handled the invocation, so we exit exactly once here
-# rather than from inside every branch.
-handled =
-  case ARGV.first
-  when "--version", "version"
-    require "rubydex/version"
-    puts "v#{Rubydex::VERSION}"
-    true
-  when nil, "-h", "--help", "help"
-    puts USAGE
-    true
-  else
-    false
-  end
-
-exit if handled
-
-command = ARGV.shift
-
-def with_timer(io, message)
-  io.print(message)
-  start = Process.clock_gettime(Process::CLOCK_MONOTONIC, :float_millisecond)
-  yield
-  duration = Process.clock_gettime(Process::CLOCK_MONOTONIC, :float_millisecond) - start
-  io.puts(" finished in #{duration.round(2)}ms")
-end
-
-# Builds the workspace graph, sending progress messages to `progress_io`.
-def build_graph(progress_io)
-  graph = Rubydex::Graph.new
-  graph.load_config
-  with_timer(progress_io, "Indexing workspace...") { graph.index_workspace }
-  with_timer(progress_io, "Resolving graph...") { graph.resolve }
-  graph
-end
-
-require "rubydex"
-
-# Resolve the command into an operation on a populated graph. Each command parses its own options
-# and does any graph-independent work here; a command that needs no graph (like `query --schema`)
-# handles itself and exits. Whatever falls through returns a lambda that runs against the graph.
-operation =
-  case command
-  when "query"
-    schema = false
-    format = "table"
-    OptionParser.new do |parser|
-      parser.banner = "Usage: rdx query <CYPHER> [options]"
-      parser.on("--schema", "Describe the queryable schema instead of running a query") { schema = true }
-      parser.on("--format FORMAT", ["table", "json"], "Output format (table or json)") { |value| format = value }
-      parser.on("-h", "--help", "Show this help") do
-        puts parser
-        exit
-      end
-    end.parse!
-
-    query = ARGV.shift
-
-    if schema
-      warn("warning: ignoring query argument because `--schema` was given") if query
-      # The schema is static, so describe it without building a graph, then exit.
-      print(Rubydex::Query.schema(format))
-      exit
-    end
-
-    abort_with_usage("`query` requires a Cypher query argument (or pass `--schema`)") if query.nil? || query.empty?
-
-    # Parse the query up front so a malformed query fails fast, before the expensive indexing below.
-    parsed = begin
-      Rubydex::Query.parse(query)
-    rescue ArgumentError => e
-      abort(e.message)
-    end
-
-    lambda do |graph|
-      print(parsed.render(graph, format))
-    rescue ArgumentError => e
-      abort(e.message)
-    end
-  when "console"
-    OptionParser.new do |parser|
-      parser.banner = "Usage: rdx console"
-      parser.on("-h", "--help", "Show this help") do
-        puts parser
-        exit
-      end
-    end.parse!
-
-    lambda do |graph|
-      require "irb"
-      IRB.setup(nil)
-      IRB.conf[:IRB_NAME] = "rubydex"
-      IRB::Irb.new(IRB::WorkSpace.new(binding)).run(IRB.conf)
-    rescue LoadError
-      abort("Interactive mode requires `irb` to be in the bundle")
-    end
-  when "mcp"
-    parser = OptionParser.new do |p|
-      p.banner = "Usage: rdx mcp [PATH]"
-      p.on("-h", "--help", "Show this help") do
-        puts p
-        exit
-      end
-    end
-    begin
-      parser.parse!
-    rescue OptionParser::ParseError => e
-      abort_with_usage(e.message)
-    end
-
-    path = ARGV.shift || Dir.pwd
-    abort_with_usage("unexpected argument: #{ARGV.first}") unless ARGV.empty?
-
-    # The MCP server manages its own graph lifecycle for the given workspace, so it runs here
-    # instead of falling through to the shared graph build below.
-    require "rubydex/mcp_server"
-    Rubydex::MCPServer.run(path)
-    exit
-  else
-    abort_with_usage("unknown command: #{command}")
-  end
-
-# Everything that reaches here operates on a populated graph. Progress goes to stderr so stdout
-# carries only the command's output (e.g. for piping a query's JSON).
-graph = build_graph($stderr)
-operation.call(graph)
+Rubydex::CLI.start

data/ext/rubydex/config.c

@@ -0,0 +1,140 @@
+#include "config.h"
+#include "diagnostic.h"
+#include "rustbindings.h"
+#include "utils.h"
+
+/*
+ * RDoc parser workaround for https://github.com/ruby/rdoc/issues/1744:
+ * mRubydex = rb_define_module("Rubydex")
+ */
+
+static VALUE mRubydex;
+// Defined here so that the configuration can build them, but implemented in Ruby (`lib/rubydex/config.rb`), like the
+// other value objects handed back to Ruby.
+static VALUE cLinterConfig;
+static VALUE cRuleConfig;
+static ID id_linter;
+
+// Free function for Rubydex::Config: releases the parsed configuration allocated by Rust.
+static void config_free(void *ptr) {
+    if (ptr) {
+        rdx_config_free(ptr);
+    }
+}
+
+// Body function for rb_ensure while building a Rubydex::LinterConfig.
+static VALUE config_linter_build(VALUE opaque_rule_array) {
+    CLinterRuleArray *rule_array = (CLinterRuleArray *)(uintptr_t)opaque_rule_array;
+    VALUE rules = rb_hash_new_capa((long)rule_array->len);
+
+    for (size_t i = 0; i < rule_array->len; i++) {
+        CLinterRule rule = rule_array->items[i];
+        VALUE rule_name = rb_str_freeze(rb_utf8_str_new(rule.name, (long)rule.name_length));
+        VALUE exclude_patterns = rb_ary_new_capa((long)rule.exclude_patterns_length);
+        for (size_t j = 0; j < rule.exclude_patterns_length; j++) {
+            CConfigString pattern = rule.exclude_patterns[j];
+            rb_ary_push(exclude_patterns, rb_str_freeze(rb_utf8_str_new(pattern.data, (long)pattern.length)));
+        }
+        rb_obj_freeze(exclude_patterns);
+
+        VALUE severity = rule.severity == NULL
+            ? Qnil
+            : rdxi_build_diagnostic_severity_value(mRubydex, *rule.severity);
+        VALUE argv[] = {rule_name, rule.enabled ? Qtrue : Qfalse, exclude_patterns, severity};
+
+        rb_hash_aset(rules, rule_name, rb_class_new_instance(4, argv, cRuleConfig));
+    }
+
+    return rb_class_new_instance(1, &rules, cLinterConfig);
+}
+
+// Ensure function for rb_ensure while building a Rubydex::LinterConfig.
+static VALUE config_linter_ensure(VALUE opaque_rule_array) {
+    CLinterRuleArray *rule_array = (CLinterRuleArray *)(uintptr_t)opaque_rule_array;
+    rdx_config_linter_rules_free(*rule_array);
+
+    return Qnil;
+}
+
+static VALUE config_linter(VALUE config_obj) {
+    CLinterRuleArray rule_array = rdx_config_linter_rules(rdxi_config_from_object(config_obj));
+    VALUE opaque_rule_array = (VALUE)(uintptr_t)&rule_array;
+
+    return rb_ensure(config_linter_build, opaque_rule_array, config_linter_ensure, opaque_rule_array);
+}
+
+const rb_data_type_t config_type = {
+    .wrap_struct_name = "Rubydex::Config",
+    .function = {
+        .dmark = NULL,
+        .dfree = config_free,
+        .dsize = NULL,
+        .dcompact = NULL,
+    },
+    .parent = NULL,
+    .data = NULL,
+    .flags = RUBY_TYPED_FREE_IMMEDIATELY | RUBY_TYPED_FROZEN_SHAREABLE,
+};
+
+/*
+ * call-seq:
+ *   Rubydex::Config.load(workspace_path) -> Rubydex::Config
+ *
+ * Loads the configuration of the workspace rooted at +workspace_path+, which is where its `rubydex.toml` is expected to
+ * be. A workspace without a configuration file gets an empty configuration. Raises Rubydex::ConfigError if the file
+ * exists, but cannot be read or is malformed.
+ */
+static VALUE rdxr_config_load(VALUE klass, VALUE workspace_path) {
+    Check_Type(workspace_path, T_STRING);
+
+    struct CConfigResult result = rdx_config_load(StringValueCStr(workspace_path));
+    if (result.error != NULL) {
+        VALUE message = rb_utf8_str_new_cstr(result.error);
+        free_c_string(result.error);
+
+        VALUE config_error = rb_const_get(mRubydex, rb_intern("ConfigError"));
+        rb_exc_raise(rb_exc_new_str(config_error, message));
+    }
+
+    VALUE config = TypedData_Wrap_Struct(klass, &config_type, result.config);
+    rb_ivar_set(config, id_linter, config_linter(config));
+
+    return config;
+}
+
+/*
+ * call-seq:
+ *   workspace_path -> String
+ *
+ * Returns the root directory of the workspace this configuration was loaded for.
+ */
+static VALUE rdxr_config_workspace_path(VALUE self) {
+    const char *result = rdx_config_workspace_path(rdxi_config_from_object(self));
+    // A configuration always has a workspace, so there is no absent case to hand back to Ruby. NULL only means the
+    // conversion itself failed, which is why this raises instead of returning nil.
+    if (result == NULL) {
+        rb_raise(rb_eRuntimeError, "Converting workspace path to Ruby string failed");
+    }
+
+    return rdxi_owned_c_string_to_ruby(result);
+}
+
+void rdxi_initialize_config(VALUE moduleRubydex) {
+    mRubydex = moduleRubydex;
+
+    cLinterConfig = rb_define_class_under(mRubydex, "LinterConfig", rb_cObject);
+    cRuleConfig = rb_define_class_under(mRubydex, "RuleConfig", rb_cObject);
+    id_linter = rb_intern("@linter");
+
+    VALUE cConfig = rb_define_class_under(mRubydex, "Config", rb_cObject);
+    rb_undef_alloc_func(cConfig);
+
+    // A configuration can only be obtained through `load`; `new` would create an object with no Rust data behind it.
+    rb_undef_method(rb_singleton_class(cConfig), "new");
+
+    rb_define_singleton_method(cConfig, "load", rdxr_config_load, 1);
+    rb_define_method(cConfig, "workspace_path", rdxr_config_workspace_path, 0);
+
+    /* Returns the linter settings read from the `[linter]` section. Its rules are empty when the section is absent. */
+    rb_define_attr(cConfig, "linter", true, false);
+}

data/ext/rubydex/config.h

@@ -0,0 +1,16 @@
+#ifndef RUBYDEX_CONFIG_H
+#define RUBYDEX_CONFIG_H
+
+#include "ruby.h"
+
+extern const rb_data_type_t config_type;
+
+static inline void *rdxi_config_from_object(VALUE config_obj) {
+    void *config;
+    TypedData_Get_Struct(config_obj, void *, &config_type, config);
+    return config;
+}
+
+void rdxi_initialize_config(VALUE mRubydex);
+
+#endif // RUBYDEX_CONFIG_H