ruby_astm 1.3.2 → 1.3.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
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-  data.tar.gz: 95fcfa7ac7a2b3add62cde83c76e99617bd3f9f39577cc45ce98143f2c7f0957
+  metadata.gz: 70259b1a5a922424fe4dc0886811a9d4f5949e46bfb5c2b7d24e17bc530d28ce
+  data.tar.gz: 3f30af3c5ef76ed6d50d586ab33d05585fa336cb5194b26db60a7ca542ccb28b
 SHA512:
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-  data.tar.gz: e73b7cc9704ad9a88ad14e3acb210cf04efb7406ef67ef1224df1430c0149518055498ae8d99e7acc8709d11def2e3ce21a94b9839a6306b83d42f9522bf9a64
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+  data.tar.gz: d8837dbf234a679a43c419297c8b6d93cf16fff3bd4c7c1702dcf9a20e054bb1696a2f52c3e4daeaf5c300b666a00440c2ca44d0396bde44347d05aefd9b821e

data/lib/mappings.json

@@ -170,7 +170,7 @@
 		"TUBE" : "SERUM",
 		"REPORT_NAME" : "GGT"
 	},
-	"BID" : {
+	"BIDDY" : {
 		"LIS_CODE" : "BID",
 		"TUBE" : "SERUM",
 		"REPORT_NAME" : "Direct Bilirubin"
@@ -180,12 +180,12 @@
 		"TUBE" : "SERUM",
 		"REPORT_NAME" : "Serum Calcium"
 	},
-	"BIT" : {
+	"BITDY" : {
 		"LIS_CODE" : "BIT",
 		"TUBE" : "SERUM",
 		"REPORT_NAME" : "Total Bilirubin"
 	},
-	"INBIL" : {
+	"INBILDY" : {
 		"LIS_CODE" : "BII",
 		"TUBE" : "SERUM",
 		"REPORT_NAME" : "Indirect Bilirubin"
@@ -210,6 +210,66 @@
 		"TUBE" : "SERUM",
 		"REPORT_NAME" : "Homocysteine"
 	},
+	"SIRON" : {
+		"LIS_CODE" : "SIRON",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Iron"
+	},
+	"SUIBC" : {
+		"LIS_CODE" : "SUIBC",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum UIBC"
+	},
+	"STIBC" : {
+		"LIS_CODE" : "STIBC",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum TIBC"
+	},
+	"SURIC" : {
+		"LIS_CODE" : "SURIC",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Uric Acid"
+	},
+	"SPHOS" : {
+		"LIS_CODE" : "SPHOS",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Phosphorous"
+	},
+	"SMAG" : {
+		"LIS_CODE" : "SMAG",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Magnesium"
+	},
+	"SNATRIUM" : {
+		"LIS_CODE" : "SNATRIUM",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Sodium"
+	},
+	"SPOTASSIUM" : {
+		"LIS_CODE" : "SPOTASSIUM",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Potassium"
+	},
+	"SCHLORIDE" : {
+		"LIS_CODE" : "SCHLORIDE",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Chloride"
+	},
+	"11" : {
+		"LIS_CODE" : "SIGE",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum IgE"
+	},
+	"10" : {
+		"LIS_CODE" : "SPSA",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Prostate Specific Antigen"
+	},
+	"9" : {
+		"LIS_CODE" : "SFER",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Ferretin"
+	},
 	"8" : {
 		"LIS_CODE" : "TSH",
 		"TUBE" : "SERUM",
@@ -314,5 +374,51 @@
 		"LIS_CODE" : "CLA",
 		"TUBE" : "URINE_CONTAINER",
 		"REPORT_NAME" : "Urine Routine"
+	},
+	"UA" : {
+		"LIS_CODE" : "SURIC",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Uric Acid"	
+	},
+	"PHOS" : {
+		"LIS_CODE" : "SPHOS",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Phosphorous"
+	},
+	"MG" : {
+		"LIS_CODE" : "SMAG",
+		"TUBE" : "SERUM",
+		"REPORT_NAME" : "Serum Magnesium"
+	},
+	"FULL_BODY_PACKAGE" : {
+		"LIS_CODE" : "full_body_package",
+		"TUBE" : "",
+		"REPORT_NAME" : "full body package",
+		"PACKAGE_COMPONENTS" : ["HBA1C", "TLCparam", "RBCparam", "HBparam", "HCTparam", "MCVparam", "MCHparam", "MCHCparam", "PCparam", "Nparam", "Lparam", "Mparam", "Eparam", "BASOparam", "ANCparam", "ALCparam", "AMCparam", "AECparam", "ABCparam", "RDWCVparam", "GLUR", "GLUPP", "GLUF", "CHOL", "TRIG", "HDLC", "LDL", "VLDL", "CRE", "UREA", "BUN", "ALB", "GGT", "BID", "CA", "BIT", "BII", "ALPU", "GOTHL", "GPTHL", "HOMCY", "SIRON", "SUIBC", "STIBC", "SURIC", "SPHOS", "SMAG", "SNATRIUM", "SPOTASSIUM", "SCHLORIDE", "SIGE", "SPSA", "SFER", "TSH", "T4", "T3", "HIV", "HBS", "VITD", "HCV", "B12", "ESR", "GLU", "BIL", "KET", "SG", "BLO", "pH", "PRO", "URO", "NIT", "LEU", "COL", "CLA"]
+	},
+	"PRE_OP_PACKAGE" : {
+		"LIS_CODE" : "pre_op_package",
+		"TUBE" : "",
+		"REPORT_NAME" : "pre_op_package",
+		"PACKAGE_COMPONENTS" : ["TLCparam", "RBCparam", "HBparam", "HCTparam", "MCVparam", "MCHparam", "MCHCparam", "PCparam", "Nparam", "Lparam", "Mparam", "Eparam", "BASOparam", "ANCparam", "ALCparam", "AMCparam", "AECparam", "ABCparam", "RDWCVparam", "GLUR","ESR", "GLU", "BIL", "KET", "SG", "BLO", "pH", "PRO", "URO", "NIT", "LEU", "COL", "CLA"]
+	},
+	"LIPID_PROFILE" : {
+		"LIS_CODE" : "lipid_profile",
+		"TUBE" : "",
+		"REPORT_NAME" : "lipid profile",
+		"PACKAGE_COMPONENTS" : ["CHOL", "TRIG", "HDLC", "LDL", "VLDL"]
+	},
+	"LIVER_FUNCTION_TESTS" : {
+		"LIS_CODE" : "liver_function_tests",
+		"TUBE" : "",
+		"REPORT_NAME" : "liver function tests",
+		"PACKAGE_COMPONENTS" : ["ALB", "GGT", "BID", "CA", "BIT", "BII", "ALPU", "GOTHL", "GPTHL"]
+	},
+	"KIDNEY_FUNCTION_TESTS" : {
+		"LIS_CODE" : "kidney_function_tests",
+		"TUBE" : "",
+		"REPORT_NAME" : "kidney_function_tests",
+		"PACKAGE_COMPONENTS" : ["CRE", "UREA", "BUN"]
 	}
+
 }

data/lib/publisher/poller.rb

@@ -105,11 +105,12 @@ class Poller
 
   	end	
 
+  	## first we have to test the packages.
+
   	def build_tests_hash(record)
   		#puts "Record is ---------------------------------------------"
   		#puts record
 	    tests_hash = {}
-
 	    ## key -> TUBE_NAME : eg: EDTA
 	    ## value -> its barcode id.
 	    tube_ids = {}
@@ -152,27 +153,55 @@ class Poller
 
 	    tests = record[7].split(",").compact
 
-	    puts "tests are:"
-	    puts tests.to_s
+	    ## these test names are whatever are coming 
+	    ## from 
+
+	   
 	    return tests_hash if tests_hash.empty?
+
+	    #puts "inverted mappings are:"
+	    #puts $inverted_mappings.keys.to_s
+	    #exit(1)
+	    #exit(1)
+
 	    tests.each do |test|
 	      ## use the inverted mappings to 
 	      if machine_code = $inverted_mappings[test]
+	      	puts "machine code is: #{machine_code}"
 	        ## now get its tube type
 	        ## mappings have to match the tubes defined in this file.
-	        tube = $mappings[machine_code]["TUBE"]
-	        ## now find the tests_hash which has this tube.
-	        ## and the machine code to its array.
-	        ## so how to find this.
-	        puts "tube is : #{tube}"
-	        puts "tests hash is:"
-	        puts tests_hash.to_s
-
-	        tube_key = nil
-	        unless tests_hash.keys.select{|c| c=~/#{tube}/ }.blank?
-	        	tube_key = tests_hash.keys.select{|c| c=~/#{tube}/ }[0] 
-	        	tests_hash[tube_key] << machine_code 
-	        end   
+	        
+	        if package_components = $mappings[machine_code]["PACKAGE_COMPONENTS"]
+
+	        	puts package_components.to_s
+
+	        	package_components.each do |component|
+	        		puts "doing component: #{component}"
+	        		## these are the machine codes.
+	        		## so to get the tube, you have to get it from the inverted mappings.
+	        		## cant get directly like this.
+	        		component_machine_code = $inverted_mappings[component]
+	        		puts "component machine code: #{component_machine_code}"
+
+	        		tube = $mappings[component_machine_code]["TUBE"]
+			        tube_key = nil
+			        unless tests_hash.keys.select{|c| c=~/#{tube}/ }.blank?
+			        	tube_key = tests_hash.keys.select{|c| c=~/#{tube}/ }[0] 
+			        	tests_hash[tube_key] << component_machine_code 
+			        end   
+	        	end
+
+	        else
+	        	## here also it is the same problem.
+	        	tube = $mappings[machine_code]["TUBE"]
+		        tube_key = nil
+		        unless tests_hash.keys.select{|c| c=~/#{tube}/ }.blank?
+		        	tube_key = tests_hash.keys.select{|c| c=~/#{tube}/ }[0] 
+		        	tests_hash[tube_key] << machine_code 
+		        end   
+	        end
+	       
+	        
 
 	      else
 	        AstmServer.log("ERROR: Test: #{test} does not have an LIS code")

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: ruby_astm
 version: !ruby/object:Gem::Version
-  version: 1.3.2
+  version: 1.3.3
 platform: ruby
 authors:
 - Bhargav Raut