ruby-igv 0.0.5 → 0.0.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: a162dd0aa5d26fd45b3da87eb9c8e4faec6bc47f6922dc850dc5f5f556405c26
-  data.tar.gz: 6ceb747c0f8b5b697f561c2836c8e021d29fd2bcc0cc5bc91cc7916bc24b0c61
+  metadata.gz: e0cb49945b7684826529fbdd82ae84de01c45f3b309f1cf41e096dab651ca261
+  data.tar.gz: a345c80a98c564cf7de1cb62768214f8273abf033b1c24ebb8575bb69fe00026
 SHA512:
-  metadata.gz: 0e05cd137522d371629790616283c5f2c31f96f9882979d64f46ab83530ccf14569bc039213ddda103653ad009d9818e50f1e95e5f3738cb985903da6d8c6ed2
-  data.tar.gz: 361d5f9e770f4f78304e4b99672e6e5e2c116bd8994b5d57076b808b40b27ae5fa493c74842923d4165adef2b79827ae85e5d711d9ce279f001afddb0676df95
+  metadata.gz: db09a0dc972eb58b3c90412be2a7503015ca3b32152ea2f4be89065833ed94d674fb4bce97a19a5ba8721b59be14b8c8beb00849db865d6b9ee9cfe3ea0afffc
+  data.tar.gz: b97c8c53963c3a9460a38c06bde171fd5f9494c7bdbc8b575ded5b17a854b0038ac421da45628f42865d9cecef7824485adc80e92af9281541bac6dc96466102

data/README.md

@@ -1,19 +1,22 @@
-# Ruby-IGV
+# ruby-igv
 
 [![Gem Version](https://badge.fury.io/rb/ruby-igv.svg)](https://badge.fury.io/rb/ruby-igv)
 [![Docs Latest](https://img.shields.io/badge/docs-latest-blue.svg)](https://rubydoc.info/gems/ruby-igv)
 [![The MIT License](https://img.shields.io/badge/license-MIT-orange.svg)](LICENSE.txt)
-
-Controlling [Integrative Genomics Viewer (IGV)](http://software.broadinstitute.org/software/igv/) with the [Ruby](https://github.com/ruby/ruby) language.
+[![DOI](https://zenodo.org/badge/281373245.svg)](https://zenodo.org/badge/latestdoi/281373245)
 
 ## Installation
 
+Requirement: [IGV (Integrative Genomics Viewer)](http://software.broadinstitute.org/software/igv/) and [Ruby](https://github.com/ruby/ruby).
+
 ```ruby
 gem install ruby-igv
 ```
 
 ## Usage
 
+[Enable IGV to listen on the port](https://software.broadinstitute.org/software/igv/Preferences#Advanced): Preference > Advanced > Enable port
+
 ```ruby
 igv = IGV.new
 igv.genome 'hg19'
@@ -26,7 +29,7 @@ igv.save   'region.jpg'  # save to /tmp/r2/region.png
 igv.send   'echo'        # whatever you want
 ```
 
-* [Controlling IGV through a Port](https://software.broadinstitute.org/software/igv/PortCommands)
+See [the list of Batch commands](https://github.com/igvteam/igv/wiki/Batch-commands).
 
 ## Contributing
 
@@ -35,7 +38,13 @@ igv.send   'echo'        # whatever you want
 * Write, clarify, or fix documentation
 * Suggest or add new features
 
-# Acknowledgement
+```
+Do you need commit rights to my repository?
+Do you want to get admin rights and take over the project?
+If so, please feel free to contact me @kojix2.
+```
+
+## Acknowledgement
 This gem is strongly inspired by a Python script developed by Brent Pedersen.
 * [brentp/bio-playground/igv](https://github.com/brentp/bio-playground).
 

data/lib/igv/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 class IGV
-  VERSION = '0.0.5'
+  VERSION = '0.0.6'
 end

data/lib/igv.rb

@@ -63,11 +63,11 @@ class IGV
     send "sort #{option}"
   end
 
-  def expand(_track = '')
+  def expand(track = '')
     send "expand #{track}"
   end
 
-  def collapse(_track = '')
+  def collapse(track = '')
     send "collapse #{track}"
   end
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: ruby-igv
 version: !ruby/object:Gem::Version
-  version: 0.0.5
+  version: 0.0.6
 platform: ruby
 authors:
 - kojix2
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-12-10 00:00:00.000000000 Z
+date: 2022-08-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -96,7 +96,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.1.4
+rubygems_version: 3.3.7
 signing_key: 
 specification_version: 4
 summary: Control IGV (Integrative Genomics Viewer) with Ruby.