rput 0.1.3 → 0.1.4

data/VERSION

@@ -1 +1 @@
-0.1.3
+0.1.4

data/lib/starter.rb

@@ -28,8 +28,9 @@ class CycleController
    puts required_MB
    required_MB.to_i.to_s
   end
-  def run_as_batch(script)
+  def run_as_batch(script, logpath)
     raise "#{script} missing" unless File.exist?(script)
+    raise "#{log} missing" unless File.exist?(logpath)
     raise "User Number of parsimony trees not set" unless @opts[:num_parsi_trees] > 0
     raise "Total Number of parsimony trees not set" unless @opts[:num_ptrees] > 0
     opts = @opts[:iter].to_s
@@ -42,7 +43,7 @@ class CycleController
     opts += " " + @opts[:exp_name].to_s
     opts += " " + @opts[:base_dir].to_s
     puts "./#{script} #{opts}"
-    system "./#{script} #{opts} > #{File.join @base_dir, "starter.log")}"
+    system "./#{script} #{opts} >> #{logpath}"
   end
 end
 
@@ -72,9 +73,10 @@ class TreeBunchStarter
     @bestML_bunch = File.join @bestML_trees_dir, "best_bunch.nw"
     @prev_bestML_bunch = File.join @prev_dir, "best_ml_trees", "best_bunch.nw" unless @prev_dir.nil?
     @cluster_batch = opts[:cluster_batch] 
+    @logpath = File.join @base_dir, "starter.log"
   end
   def logput(msg, error = false)
-    @logger ||= Logger.new(File.join @base_dir, "starter.log")
+    @logger ||= Logger.new(@logpath)
     if error
       @logger.error msg
     else
@@ -127,7 +129,7 @@ class TreeBunchStarter
                                       :base_dir => @base_dir,
                                       :exp_name => opts[:exp_name]
                                      )
-              c.run_as_batch(@cluster_batch)
+              c.run_as_batch(@cluster_batch, @logname)
         "cluster"
       else
         logput "****** Start update no #{@update_id} ********"
@@ -183,7 +185,7 @@ class TreeBunchStarter
                                       :base_dir => @base_dir,
                                       :exp_name => opts[:exp_name]
                                      )
-              c.run_as_batch(@cluster_batch)
+              c.run_as_batch(@cluster_batch, @logname)
               "cluster"
       else
 	      logput "Start generating initial bunch"

data/rput.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = %q{rput}
-  s.version = "0.1.3"
+  s.version = "0.1.4"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = [%q{Fernando Izquierdo-Carrasco}]

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: rput
 version: !ruby/object:Gem::Version 
-  hash: 29
+  hash: 19
   prerelease: 
   segments: 
   - 0
   - 1
-  - 3
-  version: 0.1.3
+  - 4
+  version: 0.1.4
 platform: ruby
 authors: 
 - Fernando Izquierdo-Carrasco