rgraphum 0.0.1.alpha → 0.0.2.alpha

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 8ab3d054fc3d5d89b92387e04db8c710621df787
+  data.tar.gz: 3085d7471838610f3cfe73360633d91725b5fa0f
+SHA512:
+  metadata.gz: 3f5f8cf5de9157095a065ad61135b4f3ed7e36b36c664fd257bdbeb5a62ef38772c62fe3ad73cbb4359f02c3ccf0261cfb518d24a889e35b843cf6d3dc340353
+  data.tar.gz: 60225a73f3ad2abb24cca3ba7d246c538e968d94374deee1cbfcc943beb7650f3e47b3b1a3658686a5f92072d267bf4e9c87256a58b5f28df47e4c1d711f35dc

data/.ruby-gemset

@@ -0,0 +1 @@
+rgraphum

data/.ruby-version

@@ -0,0 +1 @@
+ruby-2.0.0-p353

data/Rakefile

@@ -3,14 +3,9 @@
 require "bundler/gem_tasks"
 require 'rake/testtask'
 
-# require 'pry'
-# require 'pry-nav'
-# require 'pry-exception_explorer'
-# require 'pry-stack_explorer'
-# require 'pry-coolline'
-
 Rake::TestTask.new(:test) do |t|
-  t.pattern = "test/**/*_test.rb"
-  t.libs << "lib"
   t.libs << "test"
+  t.pattern = "test/**/*_test.rb"
 end
+
+task :default => :test

data/lib/rgraphum/importer.rb

@@ -11,27 +11,35 @@ module Rgraphum
       #
       #
       def load(options={})
-        parse_options = options.dup
-        parse_options[:vertices] &&= open(parse_options[:vertices])
-        parse_options[:edges]    &&= open(parse_options[:edges])
-        parse_options[:path]     &&= open(parse_options[:path])
-        parse_options[:options]  = options[:options]
-        parse parse_options
+        build_options = options.dup
+        build_options[:vertices] &&= open(build_options[:vertices])
+        build_options[:edges]    &&= open(build_options[:edges])
+        build_options[:path]     &&= open(build_options[:path])
+        build_options[:options]  = options[:options]
+        build build_options
       end
 
       # Parse str and load graph
       #
+      # options[:options][:format] is source file format.
+      # To build graph, method "build_graph_from_#{options[:options][:format]}" will be called.
       #
-      def parse(options={})
+      def build(options={})
         graph = Rgraphum::Graph.new
 
         case options[:format]
-        when :idg_json
-          build_graph_from_idg_json graph, options[:vertices], options[:edges], (options[:options] || {})
         when :dump
           graph = load_from(options[:path])
         else
-          raise ArgumentError, "Rgraphum::Importer::ClassMethods.parse: Unknown format: '#{options[:format]}'"
+          build_method_name1 = "build_graph_from_#{options[:format]}".to_sym
+          build_method_name2 = "build_#{options[:format]}".to_sym
+          if respond_to?(build_method_name1, true)
+            send build_method_name1, graph, options
+          elsif respond_to?(build_method_name2, true)
+            send build_method_name2, graph, options
+          else
+            raise ArgumentError, "Rgraphum::Importer::ClassMethods.build: Unknown format: '#{options[:format]}'"
+          end
         end
 
         graph
@@ -39,7 +47,11 @@ module Rgraphum
 
       private
 
-      def build_graph_from_idg_json(graph, vertices_json_str_or_stream, edges_json_str_or_stream, options={})
+      def build_graph_from_idg_json(graph, build_options={})
+        vertices_json_str_or_stream = build_options[:vertices]
+        edges_json_str_or_stream    = build_options[:edges]
+        options = build_options[:options] || {}
+
         vertex_id_hash = {}
         community_hash = {}
         verbose = options[:verbose]

data/lib/rgraphum/rgraphum_array.rb

@@ -19,7 +19,7 @@ class Rgraphum::RgraphumArray < Array
   end
 
   def self.reset_id
-    remove_instance_variable :@new_id
+    remove_instance_variable :@new_id if defined? @new_id
   end
 
   # FIXME maybe better id to start from 1

data/lib/rgraphum/version.rb

@@ -1,3 +1,3 @@
 module Rgraphum
-  VERSION = "0.0.1.alpha"
+  VERSION = "0.0.2.alpha"
 end

data/rgraphum.gemspec

@@ -1,8 +1,7 @@
 # coding: utf-8
 lib = File.expand_path('../lib', __FILE__)
 $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
-# require 'rgraphum/version'
-require 'rgraphum/version' # FIXME
+require 'rgraphum/version'
 
 Gem::Specification.new do |spec|
   spec.name          = "rgraphum"
@@ -15,16 +14,16 @@ Gem::Specification.new do |spec|
   spec.license       = "MIT"
 
   spec.files         = `git ls-files`.split($/)
-#  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
-  spec.executables   = ['rgraphum_console','rgraphum_runner']
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
   spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
   spec.require_paths = ["lib"]
   spec.has_rdoc      = 'yard'
 
-  spec.add_dependency "builder"
+  spec.add_runtime_dependency "builder"
 
   spec.add_development_dependency "bundler", "~> 1.3"
-  spec.add_development_dependency "minitest"
+  spec.add_development_dependency "rake"
+  # spec.add_development_dependency "minitest"
 
   spec.add_development_dependency 'yard'
 end

data/test/lib/rgraphum/analyzer/linear_regression_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class LinearRegressionTest < MiniTest::Test
+class LinearRegressionTest < MiniTest::Unit::TestCase
   def test_analyze
     lr = Rgraphum::Analyzer::LinearRegression.new
 

data/test/lib/rgraphum/analyzer/meme_tracker_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class MemeTrackerTest < MiniTest::Test
+class MemeTrackerTest < MiniTest::Unit::TestCase
   def setup
     @meme_tracker = make_base_phrase_graph
     @graph = make_sample_graph_for_cluster

data/test/lib/rgraphum/analyzer/twitter/rt_at_mark_test.rb

@@ -4,7 +4,7 @@ require 'test_helper'
 require 'rgraphum'
 require 'csv'
 
-class RTAtMarkTest < MiniTest::Test
+class RTAtMarkTest < MiniTest::Unit::TestCase
   def setup
     twits
   end

data/test/lib/rgraphum/array_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumArrayTest < MiniTest::Test
+class RgraphumArrayTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
   end

data/test/lib/rgraphum/bubble_test.rb

@@ -1,6 +1,6 @@
 require 'test_helper'
 
-class BubbleTest < MiniTest::Test
+class BubbleTest < MiniTest::Unit::TestCase
   # test "the truth" do
   #   assert true
   # end

data/test/lib/rgraphum/communities_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class RgraphumCommunitiesTest < MiniTest::Test
+class RgraphumCommunitiesTest < MiniTest::Unit::TestCase
   def setup
   end
 

data/test/lib/rgraphum/cosine_similarity_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class CosineSimilarityTest < MiniTest::Test
+class CosineSimilarityTest < MiniTest::Unit::TestCase
   
   def test_similarity
     csm  = CosineSimilarityMatrix.new

data/test/lib/rgraphum/edge_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumEdgeTest < MiniTest::Test
+class RgraphumEdgeTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     @graph.vertices << { id: 1, label: "hoge" }

data/test/lib/rgraphum/edges_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumEdgesTest < MiniTest::Test
+class RgraphumEdgesTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     @graph.vertices << { id: 1, label: "hoge" }

data/test/lib/rgraphum/graph_builder_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumGraphBuilderTest < MiniTest::Test
+class RgraphumGraphBuilderTest < MiniTest::Unit::TestCase
 
   def test_build_from_from_adjacency_matrix
     labels =   ["hoge","huga","piyo","puyo"] 

data/test/lib/rgraphum/graph_dup_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumDupTest < MiniTest::Test
+class RgraphumDupTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     @graph.vertices << { id: 1, label: "hoge" }

data/test/lib/rgraphum/graph_plus_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumPlusTest < MiniTest::Test
+class RgraphumPlusTest < MiniTest::Unit::TestCase
   def setup
     @graph_a = Rgraphum::Graph.new
     @graph_a.vertices = [

data/test/lib/rgraphum/graph_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumTest < MiniTest::Test
+class RgraphumTest < MiniTest::Unit::TestCase
   def setup
     make_test_graph
   end

data/test/lib/rgraphum/gremlin_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumGremlinTest < MiniTest::Test
+class RgraphumGremlinTest < MiniTest::Unit::TestCase
   # FIXME
   class Rgraphum::Vertex
     field :name, :age, :lang

data/test/lib/rgraphum/importers/idg_json_test.rb

@@ -3,8 +3,8 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumImporterIdgJsonTest < MiniTest::Test
-  def test_parse_vertex
+class RgraphumImporterIdgJsonTest < MiniTest::Unit::TestCase
+  def test_build_vertex
     vertices_json_str = <<-EOT
 {
   "result": [{
@@ -26,7 +26,7 @@ class RgraphumImporterIdgJsonTest < MiniTest::Test
 }
     EOT
 
-    graph = Rgraphum::Graph.parse(format: :idg_json, vertices: vertices_json_str)
+    graph = Rgraphum::Graph.build(format: :idg_json, vertices: vertices_json_str)
     assert_equal 1, graph.vertices.size
     assert_equal 0, graph.edges.size
 
@@ -34,7 +34,7 @@ class RgraphumImporterIdgJsonTest < MiniTest::Test
     assert_equal "person_1", vertex.label
   end
 
-  def test_parse_vertices
+  def test_build_vertices
     vertices_json_str = <<-EOT
 {
   "result": [{
@@ -84,7 +84,7 @@ class RgraphumImporterIdgJsonTest < MiniTest::Test
 }
     EOT
 
-    graph = Rgraphum::Graph.parse(format: :idg_json, vertices: vertices_json_str)
+    graph = Rgraphum::Graph.build(format: :idg_json, vertices: vertices_json_str)
     assert_equal 3, graph.vertices.size
     assert_equal 0, graph.edges.size
 
@@ -93,7 +93,7 @@ class RgraphumImporterIdgJsonTest < MiniTest::Test
     assert_equal "person_c", graph.vertices[2].label
   end
 
-  def test_parse_vertices_and_edges
+  def test_build_vertices_and_edges
     vertices_json_str = <<-EOT
 {
   "result": [{
@@ -170,7 +170,7 @@ class RgraphumImporterIdgJsonTest < MiniTest::Test
       field :created_at # FIXME
     }
 
-    graph = Rgraphum::Graph.parse(format: :idg_json, vertices: vertices_json_str, edges: edges_json_str)
+    graph = Rgraphum::Graph.build(format: :idg_json, vertices: vertices_json_str, edges: edges_json_str)
     assert_equal 3, graph.vertices.size
     assert_equal 2, graph.edges.size
 

data/test/lib/rgraphum/math/average_distance_matrix_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumMathAverageDistanceMatrixTest < MiniTest::Test
+class RgraphumMathAverageDistanceMatrixTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     # @graph.vertices = [

data/test/lib/rgraphum/math/clustering_coefficient_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumMathClusteringCoefficientTest < MiniTest::Test
+class RgraphumMathClusteringCoefficientTest < MiniTest::Unit::TestCase
   def setup
   end
 

data/test/lib/rgraphum/math/community_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class RgraphumMathCommunityTest < MiniTest::Test
+class RgraphumMathCommunityTest < MiniTest::Unit::TestCase
   def setup
     #  1 - 2
     #   \ /

data/test/lib/rgraphum/math/degree_distribution_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class  DegreeDistributionTest < MiniTest::Test
+class  DegreeDistributionTest < MiniTest::Unit::TestCase
 
 
   def setup

data/test/lib/rgraphum/math/dijkstra_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumMathDijkstraTest < MiniTest::Test
+class RgraphumMathDijkstraTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     # @graph.vertices = [

data/test/lib/rgraphum/math/modularity_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class RgraphumMathModularityTest < MiniTest::Test
+class RgraphumMathModularityTest < MiniTest::Unit::TestCase
   def setup
     #  1 - 2
     #   \ /

data/test/lib/rgraphum/math/quick_average_distance_matrix_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumMathQuickAverageDistanceMatrixTest < MiniTest::Test
+class RgraphumMathQuickAverageDistanceMatrixTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     # @graph.vertices = [

data/test/lib/rgraphum/path_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumPathTest < MiniTest::Test
+class RgraphumPathTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     @v1 = @graph.vertices.build(label: "v1")

data/test/lib/rgraphum/query/enumerable_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class RgraphumQueryEnumerableTest < MiniTest::Test
+class RgraphumQueryEnumerableTest < MiniTest::Unit::TestCase
   def setup
     @array = [
       OpenStruct.new(id: 1,  label: "aaa"),

data/test/lib/rgraphum/query/where_operators_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumQueryWhereOperatorsTest < MiniTest::Test
+class RgraphumQueryWhereOperatorsTest < MiniTest::Unit::TestCase
   def setup
     @array = [
       OpenStruct.new(id: 1,  label: "aaa"),

data/test/lib/rgraphum/query/where_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumQueryWhereTest < MiniTest::Test
+class RgraphumQueryWhereTest < MiniTest::Unit::TestCase
   def setup
     @array = [
       OpenStruct.new(id: 1,  label: "aaa"),

data/test/lib/rgraphum/simulator/ba_model_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class BAModelTest < MiniTest::Test
+class BAModelTest < MiniTest::Unit::TestCase
   def setup
     make_graph
   end

data/test/lib/rgraphum/simulator/sir_model_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class SIRModelTest < MiniTest::Test
+class SIRModelTest < MiniTest::Unit::TestCase
   def setup
     # A -- B -- C
     # |    |    |

data/test/lib/rgraphum/simulator/sis_model_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class SISModelTest < MiniTest::Test
+class SISModelTest < MiniTest::Unit::TestCase
   def setup
     # A -- B -- C
     # |    |    |

data/test/lib/rgraphum/simulator_test.rb

@@ -3,7 +3,7 @@
 require 'test_helper'
 require 'rgraphum'
 
-class RgraphumSimulatorTest < MiniTest::Test
+class RgraphumSimulatorTest < MiniTest::Unit::TestCase
   include Rgraphum::Simulator
 
   def setup

data/test/lib/rgraphum/tf_idf_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class TfIdfTest  < MiniTest::Test
+class TfIdfTest  < MiniTest::Unit::TestCase
 
   def test_tf_idf_c
     labels  = [  "A", "B", "C", "D", "E" ]

data/test/lib/rgraphum/vertex_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumVertexTest < MiniTest::Test
+class RgraphumVertexTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     @graph.vertices = [

data/test/lib/rgraphum/vertices_test.rb

@@ -3,7 +3,7 @@
 require 'rgraphum'
 require 'test_helper'
 
-class RgraphumVerticesTest < MiniTest::Test
+class RgraphumVerticesTest < MiniTest::Unit::TestCase
   def setup
     @graph = Rgraphum::Graph.new
     @graph.vertices << { id: 1, label: "hoge" }

data/test/test_helper.rb

@@ -1,11 +1,10 @@
 # -*- coding: utf-8 -*-
 
-require 'minitest'
 require 'minitest/autorun'
 require 'tempfile'
 require 'pp'
 
-class MiniTest::Test
+class MiniTest::Unit::TestCase
   # Add more helper methods to be used by all tests here...
 
   # alias :original_assert_equal :assert_equal

metadata

@@ -1,8 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rgraphum
 version: !ruby/object:Gem::Version
-  version: 0.0.1.alpha
-  prerelease: 6
+  version: 0.0.2.alpha
 platform: ruby
 authors:
 - omi
@@ -10,28 +9,25 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-08-31 00:00:00.000000000 Z
+date: 2013-12-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: builder
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: bundler
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -39,53 +35,51 @@ dependencies:
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
         version: '1.3'
 - !ruby/object:Gem::Dependency
-  name: minitest
+  name: rake
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: yard
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
-description: ! 'Rgraphum: Graphum ruby implementation'
+description: 'Rgraphum: Graphum ruby implementation'
 email:
 - rgraphum@rgraphum.com
 executables:
+- .irbrc
 - rgraphum_console
 - rgraphum_runner
 extensions: []
 extra_rdoc_files: []
 files:
 - .gitignore
+- .ruby-gemset
+- .ruby-version
 - GLOSSARIES.md
 - GREMLIN.md
 - Gemfile
@@ -193,27 +187,26 @@ files:
 homepage: http://rgraphum.com
 licenses:
 - MIT
+metadata: {}
 post_install_message: 
 rdoc_options: []
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - '>='
     - !ruby/object:Gem::Version
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>'
+  - - '>'
     - !ruby/object:Gem::Version
       version: 1.3.1
 requirements: []
 rubyforge_project: 
-rubygems_version: 1.8.25
+rubygems_version: 2.1.11
 signing_key: 
-specification_version: 3
+specification_version: 4
 summary: Graphum is graph, vertex and edge manipulation library.
 test_files:
 - test/lib/rgraphum/analyzer/linear_regression_test.rb
@@ -252,3 +245,4 @@ test_files:
 - test/lib/rgraphum/vertex_test.rb
 - test/lib/rgraphum/vertices_test.rb
 - test/test_helper.rb
+has_rdoc: yard