replication 0.1.1 → 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.gitignore +2 -0
- data/lib/replication/config.rb +1 -1
- data/lib/replication/modules/proofreading.rb +7 -16
- data/lib/replication/modules/semi_conservative.rb +15 -24
- data/lib/replication/version.rb +1 -1
- metadata +2 -4
- data/test/rails_app/log/test.log +0 -1476
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: f806ca18d9e7fba9d5e807ab8e6e116c9c9cbeb0
|
|
4
|
+
data.tar.gz: 438097738f11ebb9cd1a17479567ed95bfaf005b
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 6b55b5077da9447e8b36132215ecfaad70d3668942019c7eabac58ad8f3697134724d0f42d5169f20ed1a4c0fa541e437a291f25129db9d60e08bd52e62ebfb0
|
|
7
|
+
data.tar.gz: 4bfb05a38b7713e250ec5dc83cd39502acac12144cb027c691a9edb7177594bdeaa3dffdef64ccdffcc3a83131408ec9aee89e0bf4e83dcb872dc5b0a2206feb
|
data/lib/replication/config.rb
CHANGED
|
@@ -2,24 +2,15 @@ module Replication
|
|
|
2
2
|
module Modules
|
|
3
3
|
module Proofreading
|
|
4
4
|
|
|
5
|
-
def
|
|
6
|
-
|
|
7
|
-
include Model
|
|
8
|
-
end
|
|
5
|
+
def unwound(**options)
|
|
6
|
+
super if valid?
|
|
9
7
|
end
|
|
10
8
|
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
def replicate(**options)
|
|
18
|
-
if valid?
|
|
19
|
-
super
|
|
20
|
-
else
|
|
21
|
-
raise Replication::UnwoundError, 'The origin must be valid!'
|
|
22
|
-
end
|
|
9
|
+
def replicate(**options)
|
|
10
|
+
if valid?
|
|
11
|
+
super
|
|
12
|
+
else
|
|
13
|
+
raise Replication::UnwoundError, 'The origin must be valid!'
|
|
23
14
|
end
|
|
24
15
|
end
|
|
25
16
|
end
|
|
@@ -2,33 +2,24 @@ module Replication
|
|
|
2
2
|
module Modules
|
|
3
3
|
module SemiConservative
|
|
4
4
|
|
|
5
|
-
def
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
5
|
+
def unwound(**options)
|
|
6
|
+
strand_class.new({
|
|
7
|
+
name: options[:name],
|
|
8
|
+
pairs: strand_attributes,
|
|
9
|
+
origin: self
|
|
10
|
+
})
|
|
9
11
|
end
|
|
10
12
|
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
})
|
|
19
|
-
end
|
|
20
|
-
|
|
21
|
-
def replicate(**options)
|
|
22
|
-
strand_class.to_adapter.create!({
|
|
23
|
-
name: options[:name],
|
|
24
|
-
pairs: strand_attributes,
|
|
25
|
-
origin: self
|
|
26
|
-
})
|
|
27
|
-
end
|
|
13
|
+
def replicate(**options)
|
|
14
|
+
strand_class.to_adapter.create!({
|
|
15
|
+
name: options[:name],
|
|
16
|
+
pairs: strand_attributes,
|
|
17
|
+
origin: self
|
|
18
|
+
})
|
|
19
|
+
end
|
|
28
20
|
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
end
|
|
21
|
+
def strand_attributes
|
|
22
|
+
_strand_attributes.except(*replication_config.except)
|
|
32
23
|
end
|
|
33
24
|
end
|
|
34
25
|
end
|
data/lib/replication/version.rb
CHANGED
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: replication
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.1.
|
|
4
|
+
version: 0.1.2
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Rodrigo DeAlmeida
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2014-06-
|
|
11
|
+
date: 2014-06-24 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: bundler
|
|
@@ -82,7 +82,6 @@ files:
|
|
|
82
82
|
- test/rails_app/config/routes.rb
|
|
83
83
|
- test/rails_app/config/secrets.yml
|
|
84
84
|
- test/rails_app/db/migrate/830335961_organism_migration.rb
|
|
85
|
-
- test/rails_app/log/test.log
|
|
86
85
|
- test/replication/modules/proofreading_test.rb
|
|
87
86
|
- test/replication/modules/semi_conservative_test.rb
|
|
88
87
|
- test/replication/process_test.rb
|
|
@@ -134,7 +133,6 @@ test_files:
|
|
|
134
133
|
- test/rails_app/config/routes.rb
|
|
135
134
|
- test/rails_app/config/secrets.yml
|
|
136
135
|
- test/rails_app/db/migrate/830335961_organism_migration.rb
|
|
137
|
-
- test/rails_app/log/test.log
|
|
138
136
|
- test/replication/modules/proofreading_test.rb
|
|
139
137
|
- test/replication/modules/semi_conservative_test.rb
|
|
140
138
|
- test/replication/process_test.rb
|