renalware-core 2.0.38 → 2.0.39
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/app/assets/stylesheets/renalware/modules/_users.scss +1 -0
- data/app/assets/stylesheets/renalware/partials/_tables.scss +1 -1
- data/app/controllers/renalware/hd/ongoing_sessions_controller.rb +6 -1
- data/app/controllers/renalware/patients/bookmarks_controller.rb +10 -0
- data/app/models/renalware/medications/dose_unit.rb +1 -0
- data/app/models/renalware/patients/clear_patient_ukrdc_data.rb +23 -0
- data/app/models/renalware/patients/patient_listener.rb +13 -0
- data/app/models/renalware/transplants/registrations/wait_list_query.rb +34 -38
- data/app/presenters/renalware/dashboard/dashboard_presenter.rb +10 -2
- data/app/presenters/renalware/mdm_presenter.rb +4 -6
- data/app/views/renalware/admin/users/_summary_part.html.slim +4 -3
- data/app/views/renalware/dashboard/dashboards/_content.html.slim +17 -9
- data/app/views/renalware/hd/mdm/_summary.html.slim +3 -1
- data/app/views/renalware/hd/ongoing_sessions/_table.html.slim +3 -3
- data/app/views/renalware/mdm/_events.html.slim +11 -9
- data/app/views/renalware/mdm/show.html.slim +1 -0
- data/app/views/renalware/modalities/modalities/new.html.slim +5 -4
- data/app/views/renalware/patients/bookmarks/index.html.slim +2 -0
- data/app/views/renalware/pd/mdm/_summary.html.slim +9 -0
- data/app/views/renalware/pd/mdm/_top.html.slim +2 -0
- data/app/views/renalware/transplants/mdm/_bottom.html.slim +0 -3
- data/config/initializers/renalware.rb +2 -1
- data/config/locales/renalware/medications/prescription.yml +1 -0
- data/config/routes.rb +1 -1
- data/db/migrate/20180712143314_add_hidden_to_modality_descriptions.rb +5 -0
- data/db/migrate/20180718172750_update_audit_letters_authors_to_version_3.rb +17 -0
- data/db/views/reporting_main_authors_audit_v03.sql +36 -0
- data/lib/renalware/version.rb +1 -1
- metadata +9 -3
- data/app/views/renalware/low_clearance/mdm/_bottom.html.slim +0 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 68409a0a75c780847c2cdf55ab44325dd993b74fd850090e86f5925efd592eee
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data.tar.gz: a69a86d2c84b6db5e7b7e5823fac9a37d41c8f19fda3af2810b1216b4ae631fb
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 2e4088f788a4da2c0a309045d83ba2d01644b6b1064108ec59b3fc8b1213f2d56a506a034250fdf9986c3024f5d49b4e21d2f05a1cc64200ac0394839ccaf079
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data.tar.gz: 2fcfebba60f4b399ac10f134fe846946bccaaf89dc11089acd8553b396343af99b8d13bd7efcb9430c45156da7be74e50ab92e412384da1da56d446d99e6fada
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@@ -9,7 +9,12 @@ module Renalware
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def show
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query = Sessions::OngoingQuery.new(q: params[:q])
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-
sessions = query.call
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sessions = query.call
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.includes(
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:hospital_unit, :signed_on_by, :signed_off_by,
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patient: { current_modality: [:description] }
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)
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.page(page).per(per_page || 15)
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authorize sessions
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render locals: { query: query.search, sessions: sessions }
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end
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@@ -5,6 +5,16 @@ module Renalware
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class BookmarksController < BaseController
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before_action :load_patient, only: :create
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# Display the user's bookmarks
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def index
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bookmarks = Patients.cast_user(current_user)
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.bookmarks
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.ordered
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.includes(patient: [current_modality: :description])
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authorize bookmarks
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render locals: { bookmarks: bookmarks }
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end
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# idempotent
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def create
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Bookmark.find_or_create_by!(user: user, patient: patient) do |bookmark|
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@@ -0,0 +1,23 @@
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# frozen_string_literal: true
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require_dependency "renalware/patients"
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require "attr_extras"
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module Renalware
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module Patients
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class ClearPatientUKRDCData
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pattr_initialize [:patient!, :by!]
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def self.call(**args)
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new(**args).call
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end
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def call
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patient.send_to_rpv = false
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patient.rpv_decision_on = Time.zone.today
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patient.rpv_recorded_by = by.to_s
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patient.save_by!(by)
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end
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end
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end
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end
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# frozen_string_literal: true
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require_dependency "renalware/medications"
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module Renalware
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module Patients
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class PatientListener
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def patient_modality_changed_to_death(patient:, actor:, **)
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ClearPatientUKRDCData.call(patient: patient, by: actor)
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end
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end
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end
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end
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@@ -33,19 +33,47 @@ module Renalware
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end
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end
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#
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#
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#
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# The status_mismatch filter finds patients with a UKT status that does not match their
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# tx wait list status. We filter out UKT statuses of null or ''.
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# At some point we will have turn this into a mapping object or hash because there will
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# probably not be a 1 to 1 mapping from wait list to UKT status.
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module Scopes
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# rubocop:disable Metrics/MethodLength
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def apply_filter(filter)
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case filter
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when :status_mismatch
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-
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.
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joins(statuses: :description)
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.where(transplant_registration_statuses: { terminated_on: nil })
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.where(
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<<-SQL.squish
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(
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transplant_registration_status_descriptions.code in ('active','suspended')
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and
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(
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transplant_registrations.document -> 'uk_transplant_centre' ->> 'status' not ilike '%' || transplant_registration_status_descriptions.code || '%'
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or
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transplant_registrations.document -> 'uk_transplant_centre' ->> 'status' = ''
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or
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transplant_registrations.document -> 'uk_transplant_centre' ->> 'status' IS NULL
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)
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)
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or
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(
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transplant_registration_status_descriptions.code not in ('active','suspended')
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and
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(
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transplant_registrations.document -> 'uk_transplant_centre' ->> 'status' ilike '%active%'
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or
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transplant_registrations.document -> 'uk_transplant_centre' ->> 'status' ilike '%suspended%'
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)
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)
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SQL
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)
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else
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all
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end
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end
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# rubocop:enable Metrics/MethodLength
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end
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private
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@@ -77,13 +105,6 @@ module Renalware
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.where(transplant_registration_status_descriptions: { code: codes })
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}
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scope :current_status_not_in, lambda { |codes|
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codes ||= %w(active)
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joins(statuses: :description)
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.where(transplant_registration_statuses: { terminated_on: nil })
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.where.not(transplant_registration_status_descriptions: { code: codes })
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}
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-
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ransacker :crf_highest_value do
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Arel.sql("transplant_registrations.document -> 'crf' -> 'highest' ->> 'result'")
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end
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@@ -102,35 +123,10 @@ module Renalware
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Arel.sql("renal_profiles.esrf_on")
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end
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scope :ukt_status_is, lambda { |status|
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where(
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"transplant_registrations.document -> 'uk_transplant_centre' ->> 'status' ilike ?",
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status
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)
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}
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scope :ukt_status_is_not, lambda { |status|
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where.not(
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"transplant_registrations.document -> 'uk_transplant_centre' ->> 'status' ilike ?",
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status
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)
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}
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scope :current_status_is_active, ->{ current_status_in(:active) }
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scope :current_status_is_not_active, ->{ current_status_not_in(:active) }
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scope :ukt_status_is_active, ->{ ukt_status_is(:active) }
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scope :ukt_status_is_not_active, ->{ ukt_status_is_not(:active) }
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-
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private_class_method :ransackable_scopes
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def self.ransackable_scopes(_auth_object = nil)
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%i(current_status_in
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current_status_not_in
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current_status_is_active
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current_status_is_not_active
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ukt_status_is
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ukt_status_is_not
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ukt_status_is_active
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ukt_status_is_not_active
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status_mismatches)
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%i(current_status_in)
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end
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end
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end
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@@ -30,6 +30,7 @@ module Renalware
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.reverse
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.where("author_id = ? or created_by_id = ?", user.id, user.id)
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.in_progress
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.includes(:author, :patient, :letterhead)
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)
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# Renalware::Letters.cast_author(user)
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end
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def unread_messages_receipts
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@unread_messages_receipts ||= begin
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receipts = Messaging::Internal.cast_recipient(user)
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receipts = Messaging::Internal.cast_recipient(user)
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.receipts
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.includes(message: [:author, :patient])
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.unread
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CollectionPresenter.new(receipts, Messaging::Internal::ReceiptPresenter)
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end
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end
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def unread_electronic_ccs
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@unread_electronic_ccs ||= begin
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receipts = Letters::ElectronicReceipt
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receipts = Letters::ElectronicReceipt
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.includes(letter: [:patient, :author, :letterhead])
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.unread
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.for_recipient(user.id)
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.ordered
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CollectionPresenter.new(receipts, Letters::ElectronicReceiptPresenter)
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end
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end
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result
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end
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def
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.first
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&.description
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&.name
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def current_transplant_status
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@current_transplant_status ||= begin
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Renalware::Transplants::Registration.for_patient(patient).first&.current_status
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end
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end
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private
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-
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-
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-
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article.admin--users
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header
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h2 Admin
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=link_to summary_part.users_needing_approval_title, admin_users_path(q: { unapproved: true })
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.dashboard-content
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-
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-
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article.letters
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header
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h2 Letters in Progress
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- if dashboard.letters_in_progress.any?
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#letters-in-progress
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= render "renalware/dashboard/letters/table", letters: dashboard.letters_in_progress
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- else
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p.empty-section= t(".letters.in_progress.none").html_safe
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-
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-
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article.bookmarks
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header
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h2.title= "Bookmarked Patients"
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ul
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li= link_to "View All", bookmarks_path, class: "button"
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- if dashboard.bookmarks.any?
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#bookmarks
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= render "renalware/dashboard/bookmarks/table", bookmarks: dashboard.bookmarks
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- else
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p.empty-section= t(".bookmarks.none")
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-
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-
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article.messages
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header
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h2 Messages
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ul
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li= render "renalware/messaging/shared/key"
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- if dashboard.unread_messages_receipts.any?
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= render "renalware/messaging/shared/key"
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.unread-messages
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= render "renalware/messaging/internal/receipts/table",
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receipts: dashboard.unread_messages_receipts
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- else
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p.empty-section= t(".messages.none")
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-
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-
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article.electonic_ccs
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header
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h2 Electronic CCs
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- if dashboard.unread_electronic_ccs.any?
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= render "renalware/letters/electronic_receipts/table",
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receipts: dashboard.unread_electronic_ccs
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table.report
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thead
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tr
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-
th.noprint.col-width-
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th.noprint.col-width-13
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th.col-width-medium= sort_link([:renalware, query], :patient_family_name, "Patient")
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th.col-width-
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th.col-width-reference-no Hosp No
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th= sort_link([:renalware, query], :patient_born_on, "Age")
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th= sort_link([:renalware, query], :patient_sex, "Sex")
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th Current Modality
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th.col-width-tiny Current Modality
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th= sort_link([:renalware, query], :hospital_unit_name, "Unit")
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th.col-width-date= sort_link([:renalware, query], :performed_on, "Date")
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th.col-width-time= sort_link([:renalware, query], :start_time, "Start Time")
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@@ -1,10 +1,12 @@
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-
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-
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-
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-
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-
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- events = mdm.events
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.columns.medium-12.large-12
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article.events
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header
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h2 Events
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.supplemental
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span= "#{events.length} of #{mdm.patient.summary.events_count}"
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= link_to "View All",
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patient_events_path(mdm.patient),
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class: "button secondary"
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-
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= render "renalware/events/events/table", events: events
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@@ -13,10 +13,11 @@
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.large-9.columns
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= field_set_tag "", class: "borderless" do
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= m.
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-
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-
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-
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= m.input :description_id,
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collection: Renalware::Modalities::Description.where(hidden: false),
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input_html: { id: "modality-description-select" },
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label_method: :name, value_method: :id,
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|
+
wrapper: :horizontal_medium
|
20
21
|
|
21
22
|
.hide-death
|
22
23
|
= m.input :modal_change_type,
|
@@ -1,6 +1,8 @@
|
|
1
1
|
.columns.medium-12.large-6
|
2
2
|
- if mdm.current_regime
|
3
3
|
= render "renalware/pd/regimes/current_regime", current_regime: mdm.current_regime
|
4
|
+
.columns.medium-12.large-6
|
5
|
+
= render "summary", mdm: mdm
|
4
6
|
.columns.medium-12.large-6
|
5
7
|
= render "prescriptions", mdm: mdm, with_esa: true
|
6
8
|
.columns.medium-12.large-6
|
@@ -9,7 +9,8 @@ Renalware.configure do |config|
|
|
9
9
|
"Renalware::Modalities::ChangePatientModality" => [
|
10
10
|
"Renalware::Medications::PatientListener",
|
11
11
|
"Renalware::Letters::PatientListener",
|
12
|
-
"Renalware::HD::PatientListener"
|
12
|
+
"Renalware::HD::PatientListener",
|
13
|
+
"Renalware::Patients::PatientListener"
|
13
14
|
],
|
14
15
|
"Renalware::Letters::ApproveLetter" => [],
|
15
16
|
"Renalware::Pathology::CreateObservationRequests" => []
|
data/config/routes.rb
CHANGED
@@ -110,7 +110,7 @@ Renalware::Engine.routes.draw do
|
|
110
110
|
as: :invocations
|
111
111
|
end
|
112
112
|
|
113
|
-
resources :bookmarks, controller: "patients/bookmarks", only: :destroy
|
113
|
+
resources :bookmarks, controller: "patients/bookmarks", only: [:destroy, :index]
|
114
114
|
resource :dashboard, only: :show, controller: "dashboard/dashboards"
|
115
115
|
resource :worryboard, only: :show, controller: "patients/worryboard"
|
116
116
|
|
@@ -0,0 +1,17 @@
|
|
1
|
+
class UpdateAuditLettersAuthorsToVersion3 < ActiveRecord::Migration[5.1]
|
2
|
+
def change
|
3
|
+
update_view :reporting_main_authors_audit,
|
4
|
+
materialized: true,
|
5
|
+
version: 3,
|
6
|
+
revert_to_version: 2
|
7
|
+
|
8
|
+
reversible do |direction|
|
9
|
+
direction.up {
|
10
|
+
connection.execute("refresh materialized view reporting_main_authors_audit;")
|
11
|
+
}
|
12
|
+
direction.down {
|
13
|
+
connection.execute("refresh materialized view reporting_main_authors_audit;")
|
14
|
+
}
|
15
|
+
end
|
16
|
+
end
|
17
|
+
end
|
@@ -0,0 +1,36 @@
|
|
1
|
+
WITH archived_clinic_letters AS (
|
2
|
+
SELECT
|
3
|
+
date_part('year' :: text, archive.created_at) AS year,
|
4
|
+
to_char(archive.created_at, 'Month' :: text) AS month,
|
5
|
+
letters.author_id,
|
6
|
+
date_part('day' :: text, (archive.created_at - (visits.date) :: timestamp without time zone)) AS days_to_archive
|
7
|
+
FROM ((letter_letters letters
|
8
|
+
JOIN letter_archives archive ON ((letters.id = archive.letter_id)))
|
9
|
+
JOIN clinic_visits visits ON ((visits.id = letters.event_id)))
|
10
|
+
WHERE (archive.created_at > (CURRENT_DATE - '3 mons' :: interval))
|
11
|
+
), archived_clinic_letters_stats AS (
|
12
|
+
SELECT
|
13
|
+
--archived_clinic_letters.year,
|
14
|
+
--archived_clinic_letters.month,
|
15
|
+
archived_clinic_letters.author_id,
|
16
|
+
count(*) AS total_letters,
|
17
|
+
round(avg(archived_clinic_letters.days_to_archive)) AS avg_days_to_archive,
|
18
|
+
((SELECT count(*) AS count
|
19
|
+
FROM archived_clinic_letters acl
|
20
|
+
WHERE ((acl.days_to_archive <= (7) :: double precision) AND
|
21
|
+
(acl.author_id = archived_clinic_letters.author_id)))) :: numeric AS archived_within_7_days
|
22
|
+
FROM archived_clinic_letters
|
23
|
+
GROUP BY archived_clinic_letters.author_id
|
24
|
+
)
|
25
|
+
|
26
|
+
SELECT
|
27
|
+
(((users.family_name) :: text || ', ' :: text) || (users.given_name) :: text) AS name,
|
28
|
+
stats.total_letters,
|
29
|
+
round(((stats.archived_within_7_days / (stats.total_letters) :: numeric) *
|
30
|
+
(100) :: numeric)) AS percent_archived_within_7_days,
|
31
|
+
stats.avg_days_to_archive,
|
32
|
+
users.id as user_id
|
33
|
+
FROM (archived_clinic_letters_stats stats
|
34
|
+
JOIN users ON ((stats.author_id = users.id)))
|
35
|
+
--GROUP BY (((users.family_name)::text || ', '::text) || (users.given_name)::text), users.id, stats.total_letters, stats.avg_days_to_archive, stats.archived_within_7_days
|
36
|
+
ORDER BY stats.total_letters desc
|
data/lib/renalware/version.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: renalware-core
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 2.0.
|
4
|
+
version: 2.0.39
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Airslie
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2018-07-
|
11
|
+
date: 2018-07-19 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: active_type
|
@@ -1618,6 +1618,7 @@ files:
|
|
1618
1618
|
- app/models/renalware/patients.rb
|
1619
1619
|
- app/models/renalware/patients/alert.rb
|
1620
1620
|
- app/models/renalware/patients/bookmark.rb
|
1621
|
+
- app/models/renalware/patients/clear_patient_ukrdc_data.rb
|
1621
1622
|
- app/models/renalware/patients/ethnicity.rb
|
1622
1623
|
- app/models/renalware/patients/idempotent_create_patient.rb
|
1623
1624
|
- app/models/renalware/patients/language.rb
|
@@ -1625,6 +1626,7 @@ files:
|
|
1625
1626
|
- app/models/renalware/patients/mdm_patients_query.rb
|
1626
1627
|
- app/models/renalware/patients/message_param_parser.rb
|
1627
1628
|
- app/models/renalware/patients/patient_hospital_identifiers.rb
|
1629
|
+
- app/models/renalware/patients/patient_listener.rb
|
1628
1630
|
- app/models/renalware/patients/patient_search.rb
|
1629
1631
|
- app/models/renalware/patients/practice.rb
|
1630
1632
|
- app/models/renalware/patients/practice_membership.rb
|
@@ -2300,7 +2302,6 @@ files:
|
|
2300
2302
|
- app/views/renalware/letters/shared/_electronic_cc_type_tabs.html.slim
|
2301
2303
|
- app/views/renalware/low_clearance/dashboards/_page_actions.html.slim
|
2302
2304
|
- app/views/renalware/low_clearance/dashboards/show.html.slim
|
2303
|
-
- app/views/renalware/low_clearance/mdm/_bottom.html.slim
|
2304
2305
|
- app/views/renalware/low_clearance/mdm/_low_clearance_profile.html.slim
|
2305
2306
|
- app/views/renalware/low_clearance/mdm/_top.html.slim
|
2306
2307
|
- app/views/renalware/low_clearance/mdm_patients/_filters.html.slim
|
@@ -2433,6 +2434,7 @@ files:
|
|
2433
2434
|
- app/views/renalware/patients/alerts/new.js.erb
|
2434
2435
|
- app/views/renalware/patients/bookmarks/_delete.html.slim
|
2435
2436
|
- app/views/renalware/patients/bookmarks/_new.html.slim
|
2437
|
+
- app/views/renalware/patients/bookmarks/index.html.slim
|
2436
2438
|
- app/views/renalware/patients/clinical_summaries/show.html.slim
|
2437
2439
|
- app/views/renalware/patients/patients/_form.html.slim
|
2438
2440
|
- app/views/renalware/patients/patients/_patient.html.slim
|
@@ -2517,6 +2519,7 @@ files:
|
|
2517
2519
|
- app/views/renalware/pd/infection_organisms/index.js.erb
|
2518
2520
|
- app/views/renalware/pd/infection_organisms/new.js.erb
|
2519
2521
|
- app/views/renalware/pd/infection_organisms/update.js.erb
|
2522
|
+
- app/views/renalware/pd/mdm/_summary.html.slim
|
2520
2523
|
- app/views/renalware/pd/mdm/_top.html.slim
|
2521
2524
|
- app/views/renalware/pd/peritonitis_episodes/_details.html.slim
|
2522
2525
|
- app/views/renalware/pd/peritonitis_episodes/_fields.html.slim
|
@@ -3278,6 +3281,8 @@ files:
|
|
3278
3281
|
- db/migrate/20180605141806_add_external_id_to_research_study_participants.rb
|
3279
3282
|
- db/migrate/20180605175211_add_application_url_to_research_studies.rb
|
3280
3283
|
- db/migrate/20180628132323_add_letter_date_indexes.rb
|
3284
|
+
- db/migrate/20180712143314_add_hidden_to_modality_descriptions.rb
|
3285
|
+
- db/migrate/20180718172750_update_audit_letters_authors_to_version_3.rb
|
3281
3286
|
- db/seeds.rb
|
3282
3287
|
- db/seeds/default/accesses/access_pd_catheter_insertion_techniques.csv
|
3283
3288
|
- db/seeds/default/accesses/access_pd_catheter_insertion_techniques.rb
|
@@ -3385,6 +3390,7 @@ files:
|
|
3385
3390
|
- db/views/reporting_hd_overall_audit_v07.sql
|
3386
3391
|
- db/views/reporting_main_authors_audit_v01.sql
|
3387
3392
|
- db/views/reporting_main_authors_audit_v02.sql
|
3393
|
+
- db/views/reporting_main_authors_audit_v03.sql
|
3388
3394
|
- db/views/reporting_pd_audit_v01.sql
|
3389
3395
|
- lib/age_calculator.rb
|
3390
3396
|
- lib/array_stringifier.rb
|