rbfam 0.2.0 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/lib/rbfam/scripts/sequences_in_mysql.rb +2 -4
- data/lib/rbfam/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: 72736d685dc023b81de0d42d323299e5cdf1c7e7
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data.tar.gz: b68c6070354e1066d9616aaa11fdc8a34e708668
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 19a5fa18cc57e0c6b1ec139609d842e69b6938491dd65bb4e5abe734130e49642b7325d37c142f4121e0055c2202310b26c66affe9c3a959ac6dbf2c5b49b573
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7
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data.tar.gz: bdc862b5010cc551ed10f6444d097f6e8af8c4b660c2d499fd08500dbb55565e8672a9d918d302f7a95ddba5afb381b2db0e5d8d4cb615aeb179dafc023f234c
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data/Gemfile.lock
CHANGED
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@@ -1,5 +1,3 @@
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1
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-
# SequenceTable(id: integer, family: string, accession: string, sequence: text, sequence_length: integer, from: integer, to: integer, seq_from: integer, seq_to: integer, seed: boolean, created_at: datetime, updated_at: datetime, extended: boolean)
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-
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require "mysql2"
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require "active_record"
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@@ -8,7 +6,7 @@ module Rbfam
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class Sequence < ActiveRecord::Base
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belongs_to :alignment
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-
validates_uniqueness_of :accession, scope: [:
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9
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validates_uniqueness_of :accession, scope: [:stripped_sequence, :from, :to]
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def self.connect
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ActiveRecord::Base.establish_connection(config = { adapter: "mysql2", username: "root", reconnect: true })
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@@ -24,7 +22,7 @@ module Rbfam
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def to_rbfam(family = nil)
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# Should use a singleton pattern here to look up the family.
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::Rbfam::Sequence.new(family || Rbfam::Family.new(family), accession, from, to, { sequence:
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::Rbfam::Sequence.new(family || Rbfam::Family.new(family), accession, from, to, { sequence: stripped_sequence })
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end
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end
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data/lib/rbfam/version.rb
CHANGED
metadata
CHANGED
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: rbfam
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version: !ruby/object:Gem::Version
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-
version: 0.2.
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version: 0.2.1
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platform: ruby
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authors:
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- Evan Senter
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@@ -247,7 +247,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.4.
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rubygems_version: 2.4.5
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signing_key:
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specification_version: 4
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summary: Bindings to Rfam.
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