rbbt-util 5.8.8 → 5.8.9

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 79182b6a00b36773864861817a0994c8b89b466a
-  data.tar.gz: 64eda216950e3ea231a67d5ebf463ddfd6f99855
+  metadata.gz: 35fd0fde3df8674639985a5bbabd89e0a83058ee
+  data.tar.gz: dc3c48e82d9f04bedf08f44e9464808f5391b431
 SHA512:
-  metadata.gz: 77f978c48f2f87df1b39e200d02ddec6b2b9e99413281935c4e95d8c8320e8f1ad3b4ec30e43677af723b19386152f86b10a0faee2e466fdd6d745c65d1d2c83
-  data.tar.gz: 0144b36d0f85345835b9abba865aa866e7d98df42f73f3594c967b8d5dfb8cb07f19719fe11c1bea3f03b5871779fac3146966b19a6e6edf2f10f21e55d28521
+  metadata.gz: 03400322b9a7c297733595da6383d92bdd8da7885e606ab4fdfd2676d92889d6be8a2143b8116962ab99d9e8d877644d7dedf58abd635e39c4de1619c69b661a
+  data.tar.gz: ab8493c97a47c7e075c0db9556c1d1c62b46d0801beabf033c27e9f58d9e9c342b2fc831f22d7fdbef0a08f04c145a8be7badc39108eb159b91fe10b8fc39098

data/lib/rbbt/util/simpleopt/get.rb

@@ -41,7 +41,7 @@ module SOPT
 
   def self.require(options, *parameters)
     parameters.flatten.each do |parameter|
-      raise ParameterException, "Parameter '#{ parameter }' not given" if options[parameter].nil?
+      raise ParameterException, "Parameter '#{ Log.color :blue, parameter }' not given" if options[parameter].nil?
     end
   end
 end

data/lib/rbbt/util/simpleopt/setup.rb

@@ -2,21 +2,20 @@ require 'rbbt/util/simpleopt/parse'
 require 'rbbt/util/simpleopt/get'
 require 'rbbt/util/simpleopt/doc'
 module SOPT
+
   def self.setup(str)
-    summary, synopsys, description, options = str.split(/\n\n+/)
+    parts = str.split(/\n\n+/)
 
-    if summary[0]=="-"
-      summary, synopsys, description, options = nil, nil, nil, summary
-    end
+    summary = parts.shift unless parts.first =~ /^\s*\$-/
+    synopsys = parts.shift if parts.first =~ /^\s*\$/
 
-    if synopsys and synopsys[0] != "$"
-      description, options = synopsys, description
-      synopsys = nil
+    description = []
+    while parts.first and parts.first !~ /^\s*-/
+      description << parts.shift
     end
+    description = description * "\n\n"
 
-    if description and description[0] == "-"
-      description, options = nil, description
-    end
+    options = parts.collect{|part| part.split("\n").select{|l| l=~ /^\s*-/ }  }.flatten.compact * "\n"
 
     synopsys.sub!(/^\$\s+/,'') if synopsys
 

data/share/rbbt_commands/workflow/task

@@ -131,7 +131,27 @@ def fix_options(workflow, task, job_options)
   job_options_cleaned
 end
 
-options = SOPT.get <<EOF
+options = SOPT.setup <<EOF
+Enact workflow tasks
+
+$ rbbt workflow task <workflow> [<task>] [<options>]
+
+Examine workflows and enact tasks from them. If no `task` is specified, a list
+of available tasks is shown. If a `task` is given it will be enacted with the
+parameters specified in `options`. Use *-h* option to display the description
+of a task, including the parameters it accepts; and some examples, if
+available. Examples can be enacted using `rbbt workflow example <workflow>
+[<task>] [<example>]`.
+
+When a task is enacted a job is instantiated. This job is identified by the
+`jobname` (which is *Default* unless specified otherwise) and the values of the
+parameters. If the same taks is enacted using the same `jobname` and
+parameters, then the same job will be the same. 
+
+The first time a job is executed it will save the result. Once the job is done
+you can re-doit using the `clean` parameter. The `recursive_clean` cleans all
+the job dependencies recursively.
+
 -h--help Show this help:
 -wd--workdir* Change the working directory of the workflow:
 -as--array_separator* Change the character that separates elements of Arrays, ',', '|', or '\\n' by default:

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.8.8
+  version: 5.8.9
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-03-17 00:00:00.000000000 Z
+date: 2014-03-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake