rbbt-util 5.5.20 → 5.5.21

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data/lib/rbbt/resource.rb CHANGED
@@ -57,6 +57,20 @@ module Resource
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  url = File.join(remote_server, '/resource/', self.to_s, 'get_file')
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  url << "?" << Misc.hash2GET_params(:file => path, :create => false)
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  begin
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+ response = Net::HTTP.get_response(URI(url))
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+
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+ case response
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+ when Net::HTTPSuccess then
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+ Open.write(final_path, response.body)
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+ when Net::HTTPRedirection then
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+ location = response['location']
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+ Log.debug("Feching directory from: #{location}. Into: #{final_path}")
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+ Misc.in_dir final_path do
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+ CMD.cmd('tar xvfz -', :in => Open.open(location))
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+ end
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+ else
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+ raise "Response not understood: #{response.inspect}"
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+ end
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  Open.write(final_path, Open.read(url, :nocache => true))
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  return true
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  rescue
@@ -27,8 +27,13 @@ module Path
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  Path.setup File.dirname(self), @pkgdir, @resource
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  end
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+ def directory?
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+ return nil unless self.exists?
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+ File.directory? self.find
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+ end
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+
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  def glob(pattern = '*')
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- exp = File.join(self.find, pattern)
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+ exp = File.join(self.produce, pattern)
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  Dir.glob(exp).collect{|f| Path.setup(f, self.resource, self.pkgdir)}
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  end
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@@ -22,7 +22,6 @@ end
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  module Misc
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  class FieldNotFoundError < StandardError;end
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-
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  def self.correct_icgc_mutation(pos, ref, mut_str)
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  mut = mut_str
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  mut = '-' * (mut_str.length - 1) if mut =~/^-[ACGT]/
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: rbbt-util
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  version: !ruby/object:Gem::Version
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- version: 5.5.20
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+ version: 5.5.21
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  platform: ruby
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  authors:
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  - Miguel Vazquez