rbbt-util 5.5.20 → 5.5.21

checksums.yaml

@@ -1,15 +1,15 @@
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data/lib/rbbt/resource.rb

@@ -57,6 +57,20 @@ module Resource
     url = File.join(remote_server, '/resource/', self.to_s, 'get_file')
     url << "?" << Misc.hash2GET_params(:file => path, :create => false)
     begin
+      response = Net::HTTP.get_response(URI(url))
+
+      case response
+      when Net::HTTPSuccess then
+        Open.write(final_path, response.body)
+      when Net::HTTPRedirection then
+        location = response['location']
+        Log.debug("Feching directory from: #{location}. Into: #{final_path}")
+        Misc.in_dir final_path do
+          CMD.cmd('tar xvfz -', :in => Open.open(location))
+        end
+      else
+        raise "Response not understood: #{response.inspect}"
+      end
       Open.write(final_path, Open.read(url, :nocache => true))
       return true
     rescue

data/lib/rbbt/resource/path.rb

@@ -27,8 +27,13 @@ module Path
     Path.setup File.dirname(self), @pkgdir, @resource
   end
 
+  def directory?
+    return nil unless self.exists?
+    File.directory? self.find 
+  end
+
   def glob(pattern = '*')
-    exp = File.join(self.find, pattern)
+    exp = File.join(self.produce, pattern)
     Dir.glob(exp).collect{|f| Path.setup(f, self.resource, self.pkgdir)}
   end
 

data/lib/rbbt/util/misc.rb

@@ -22,7 +22,6 @@ end
 module Misc
   class FieldNotFoundError < StandardError;end
 
-
   def self.correct_icgc_mutation(pos, ref, mut_str)
     mut = mut_str
     mut = '-' * (mut_str.length - 1) if mut =~/^-[ACGT]/

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.5.20
+  version: 5.5.21
 platform: ruby
 authors:
 - Miguel Vazquez