rbbt-util 5.32.18 → 5.32.20
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- checksums.yaml +4 -4
- data/lib/rbbt/hpc/slurm.rb +1 -0
- data/lib/rbbt/workflow/definition.rb +4 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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|
4
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-
data.tar.gz:
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|
3
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+
metadata.gz: 576b7bc079d39a3054c5bdaa3c0b3af5573a26aacd6181fe65e8d450fd3ed148
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4
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+
data.tar.gz: 2dc53972fc0e8504ca327de2f680d29ac5c3df63362359528b25ec21f2c10e9b
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5
5
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SHA512:
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|
6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 3cd48cedd0a1957996b59ac51bc56b2b3c8ce8aef54454b1ff10f8f86a08c9df63a60a1d1bad7c29a0741bf687c215f36b628e614b70aa9b8181d687a075364e
|
|
7
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+
data.tar.gz: 8955e34256095ea4c2e66cc6937845f6b13cb4c87e2bc13f5f7bb4844135886407e50e31114c94e0bdba157f63aab4027c7d94add60f85f31e0646aab3bf124f
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data/lib/rbbt/hpc/slurm.rb
CHANGED
|
@@ -77,15 +77,15 @@ module Workflow
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|
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77
77
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returns workflow.tasks[oname].result_description if workflow.tasks.include?(oname) unless @result_description
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78
78
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task name do
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|
79
79
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raise RbbtException, "dependency not found in dep_task" if dependencies.empty?
|
|
80
|
-
Step.wait_for_jobs dependencies
|
|
80
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+
Step.wait_for_jobs dependencies.select{|d| d.streaming? }
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81
81
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dep = dependencies.last
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|
82
82
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dep.join
|
|
83
83
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raise dep.get_exception if dep.error?
|
|
84
84
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raise Aborted, "Aborted dependency #{dep.path}" if dep.aborted?
|
|
85
85
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set_info :result_type, dep.info[:result_type]
|
|
86
|
-
forget = config :forget_dep_tasks, "forget_dep_tasks",
|
|
86
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+
forget = config :forget_dep_tasks, "forget_dep_tasks", :default => FORGET_DEP_TASKS
|
|
87
87
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if forget
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|
88
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-
remove = config :remove_dep_tasks, "remove_dep_tasks",
|
|
88
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+
remove = config :remove_dep_tasks, "remove_dep_tasks", :default => REMOVE_DEP_TASKS
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89
89
|
|
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90
90
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self.archive_deps
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91
91
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self.copy_files_dir
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@@ -93,6 +93,7 @@ module Workflow
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|
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93
93
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Open.rm_rf self.files_dir if Open.exist? self.files_dir
|
|
94
94
|
FileUtils.cp_r dep.files_dir, self.files_dir if Open.exist?(dep.files_dir)
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|
95
95
|
Open.ln_h dep.path, self.tmp_path
|
|
96
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+
|
|
96
97
|
case remove.to_s
|
|
97
98
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when 'true'
|
|
98
99
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dep.clean
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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|
|
1
1
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--- !ruby/object:Gem::Specification
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|
2
2
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name: rbbt-util
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|
3
3
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version: !ruby/object:Gem::Version
|
|
4
|
-
version: 5.32.
|
|
4
|
+
version: 5.32.20
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|
5
5
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platform: ruby
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|
6
6
|
authors:
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|
7
7
|
- Miguel Vazquez
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2021-07-
|
|
11
|
+
date: 2021-07-15 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: rake
|