rbbt-util 5.26.97 → 5.26.98
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/hpc.rb +2 -2
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: de9a740abeb4c1fbaa721fde9b7adc9a898cef03cb3b1c5072dc0232c95f9200
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4
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data.tar.gz: 8982a5a73092d3247e7865dbb4d616e7e0fead381ae6677f81e9060fb96e5f53
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 8233b0e24b7cb607e2d12dd417efe92ab8a311b7a2f46c85fe92282e25cb78dcb0142162c9e1089d546c1b8eefaadc25ed6ffcd40ef17366a6f17e894093929a
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7
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data.tar.gz: b33750c798296b28a8184f1c3bd1c126a601f3578913377de43cb07a04bb28e6d5a10aefa89c6e6ba9c2a79188adf242d451013e9d6d3f91002f159f3c63e7a9
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data/lib/rbbt/hpc.rb
CHANGED
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@@ -19,6 +19,7 @@ module Marenostrum
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19
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contain = options.delete :contain
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sync = options.delete :sync
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contain_and_sync = options.delete :contain_and_sync
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+
group = options.delete :user_group
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wipe_container = options.delete :wipe_container
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copy_image = options.delete :copy_image
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exclusive = options.delete :exclusive
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@@ -141,7 +142,7 @@ mkdir -p "$SINGULARITY_RUBY_INLINE"
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141
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if contain
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user = ENV['USER'] || `whoami`.strip
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144
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-
group = File.basename(File.dirname(ENV['HOME']))
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145
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+
group = File.basename(File.dirname(ENV['HOME'])) if group.nil?
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scratch_group_dir = File.join('/gpfs/scratch/', group)
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projects_group_dir = File.join('/gpfs/projects/', group)
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@@ -169,7 +170,6 @@ echo "group_projects: $CONTAINER_DIR/projects/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >>
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echo "group_scratch: $CONTAINER_DIR/scratch/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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echo "user_projects: $CONTAINER_DIR/projects/#{user}/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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echo "user_scratch: $CONTAINER_DIR/scratch/#{user}/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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172
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-
echo "$CONTAINER_DIR/projects/rbbt/workflows/" > $CONTAINER_DIR/.rbbt/etc/workflow_dir
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[[ -a "$CONTAINER_DIR/projects" ]] || ln -s '#{projects_group_dir}' "$CONTAINER_DIR/projects"
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[[ -a "$CONTAINER_DIR/scratch" ]] || ln -s '#{scratch_group_dir}' "$CONTAINER_DIR/scratch"
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