rbbt-util 5.26.58 → 5.26.59

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 98881de2c7993390a6be9fad4f8def20e265e188686a14ae5f9d361371e1c48e
-  data.tar.gz: b61f48c0ff6929dc9d543c50964a488b32a8abb56b4bab883343e03e65d73a46
+  metadata.gz: b685e981aa534424a05f48f1454f9802cf9c451f0362dd4ec3b87fd81ef8a170
+  data.tar.gz: 138038980f251d5d6feaad69ae58e12790c8b17fe5cbd4cf472dad73c6da3679
 SHA512:
-  metadata.gz: d329348ff1f86c28352b4ea371582db465d8d06224f26ea205f79c88e51e68183ef0567b9c1e554f913617d72bbfff553044dc0ca738a00ce461cb5de8aa60a8
-  data.tar.gz: 2cfe2f075ff82e3b959826ae4ebac8f1bb6f5529ac7be526380052b745be39c2306b171f41cbaa63d404eeb2b2d4857552375f95a2e20af5815d2184ba1a3c7a
+  metadata.gz: 8f3a26bb60d472825b65c0fc5bb9b4ea295608a801f24453d092365a147cd115e7db9b19f85ac1a9180673d27be025ed57a5b4ea3b8803781df842450bf38778
+  data.tar.gz: 0b0a083fbc1e1c62304c7f4cd695ad7ccbb013b3becf1aa77f008317a579d6bfc8391b762d1beb26645eed0dbdd722825947ba8cedc07bd1214cb9bed9e532d7

data/bin/rbbt_exec.rb

@@ -25,7 +25,7 @@ rescue Exception
   exit(-1)
 end
 
-data = data.to_s(:sort, true) if TSV === data
+#data = data.to_s(:sort) if TSV === data
 data = data * "\n" if Array === data
 
 case
@@ -36,10 +36,10 @@ when output == "file"
     tmpfile = data
   else
     tmpfile = TmpFile.tmp_file
-    Open.write(tmpfile, data)
+    Open.write(tmpfile, data.to_s)
   end
 
   puts tmpfile
 else
-  Open.write(output, data)
+  Open.write(output, data.to_s)
 end

data/share/Rlib/util.R

@@ -41,6 +41,28 @@ rbbt.ruby <- function(code, load = TRUE, flat = FALSE, type = 'tsv', ...){
   }
 }
 
+rbbt.job.prov <- function(path){
+  code <- '
+require "rbbt-util"
+require "rbbt/workflow"
+
+path="PATH"
+
+job = Workflow.load_step path
+
+data = TSV.setup({}, "ID~Workflow,Task,Path#:type=:list")
+
+job.rec_dependencies.each do |dep|
+  id = Misc.digest(dep.path)
+  data[id] = [dep.workflow, dep.task_name, dep.path]
+end
+
+data
+'
+  code = sub("PATH", path, code)
+  return(rbbt.ruby(code, type='tsv'))
+}
+
 rbbt.job <- function(workflow, task, load=TRUE, flat = FALSE, type = 'tsv', jobname="Default", code='', log=4, ...){
 
     str = "require 'rbbt/workflow'"

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.26.58
+  version: 5.26.59
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2019-08-21 00:00:00.000000000 Z
+date: 2019-08-22 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake