rbbt-util 5.26.58 → 5.26.59
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/rbbt_exec.rb +3 -3
- data/share/Rlib/util.R +22 -0
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: b685e981aa534424a05f48f1454f9802cf9c451f0362dd4ec3b87fd81ef8a170
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4
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data.tar.gz: 138038980f251d5d6feaad69ae58e12790c8b17fe5cbd4cf472dad73c6da3679
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SHA512:
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 8f3a26bb60d472825b65c0fc5bb9b4ea295608a801f24453d092365a147cd115e7db9b19f85ac1a9180673d27be025ed57a5b4ea3b8803781df842450bf38778
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7
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data.tar.gz: 0b0a083fbc1e1c62304c7f4cd695ad7ccbb013b3becf1aa77f008317a579d6bfc8391b762d1beb26645eed0dbdd722825947ba8cedc07bd1214cb9bed9e532d7
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data/bin/rbbt_exec.rb
CHANGED
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@@ -25,7 +25,7 @@ rescue Exception
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exit(-1)
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end
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-
data = data.to_s(:sort
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#data = data.to_s(:sort) if TSV === data
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data = data * "\n" if Array === data
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case
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@@ -36,10 +36,10 @@ when output == "file"
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tmpfile = data
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else
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tmpfile = TmpFile.tmp_file
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-
Open.write(tmpfile, data)
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Open.write(tmpfile, data.to_s)
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end
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puts tmpfile
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else
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Open.write(output, data)
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Open.write(output, data.to_s)
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end
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data/share/Rlib/util.R
CHANGED
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@@ -41,6 +41,28 @@ rbbt.ruby <- function(code, load = TRUE, flat = FALSE, type = 'tsv', ...){
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}
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}
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rbbt.job.prov <- function(path){
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code <- '
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require "rbbt-util"
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require "rbbt/workflow"
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path="PATH"
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job = Workflow.load_step path
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data = TSV.setup({}, "ID~Workflow,Task,Path#:type=:list")
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job.rec_dependencies.each do |dep|
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id = Misc.digest(dep.path)
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data[id] = [dep.workflow, dep.task_name, dep.path]
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end
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data
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'
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code = sub("PATH", path, code)
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return(rbbt.ruby(code, type='tsv'))
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}
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rbbt.job <- function(workflow, task, load=TRUE, flat = FALSE, type = 'tsv', jobname="Default", code='', log=4, ...){
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str = "require 'rbbt/workflow'"
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-util
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version: !ruby/object:Gem::Version
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-
version: 5.26.
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version: 5.26.59
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2019-08-
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date: 2019-08-22 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rake
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