rbbt-util 5.26.104 → 5.26.105

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: f16163d3a0892af7b8e7bd939284c178087d657cbef7f5ada79bd4bd3d9ab6b6
+  metadata.gz: 4b23e759244b14e9806c8a57fd8028aece4c71eb232d7d52eebbd093c340148b
+  data.tar.gz: 1e4e4d33499172d23583f0250f2e3506f7b82a2a798aebbf48a130010fa21afa
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+  metadata.gz: 4f6b4f21ca16e068854fd5e18fb358bd2b10154fac9e667e228122d979c2c69a4800edbc05960969fdc63f53f5778b819cddef5bac7a16d50a3ce806dba4b49c
+  data.tar.gz: 97f30d3f45f8005437d49da986bc4e1c4f12fc1ffc4d44657451c6dbf81455695d9481024c3cd0114aefd0191ad03fcab381484e174466452f63ffcc13e9f76b

data/lib/rbbt/hpc.rb

@@ -293,7 +293,7 @@ EOF
 
         target = File.expand_path(sync)
         coda +=<<-EOF
-rsync -avt "#{source}/" "#{target}/" &>> #{fsync} 
+rsync -avztAXHP --copy-unsafe-links "#{source}/" "#{target}/" &>> #{fsync} 
 sync_es="$?" 
 find '#{target}' -type l -ls | awk '$13 ~ /^#{target.gsub('/','\/')}/ { sub("#{source}", "#{target}", $13); print $11, $13 }' | while read A B; do rm $A; ln -s $B $A; done
 EOF

data/lib/rbbt/workflow/util/archive.rb

@@ -40,7 +40,7 @@ class Step
 
       Misc.in_dir(tmpdir) do
         if File.directory?(target)
-          CMD.cmd_log("rsync -avzHP --copy-unsafe-links '#{ tmpdir }/' '#{ target }/'")
+          CMD.cmd_log("rsync -avztAXHP --copy-unsafe-links '#{ tmpdir }/' '#{ target }/'")
         else
           CMD.cmd_log("tar cvhzf '#{target}'  ./*")
         end
@@ -109,7 +109,7 @@ class Step
 
       Misc.in_dir(tmpdir) do
         if File.directory?(target)
-          CMD.cmd_log("rsync -avzHP --copy-unsafe-links '#{ tmpdir }/' '#{ target }/'")
+          CMD.cmd_log("rsync -avztAXHP --copy-unsafe-links '#{ tmpdir }/' '#{ target }/'")
         else
           CMD.cmd_log("tar cvhzf '#{target}'  ./*")
         end
@@ -204,7 +204,7 @@ puts resource[path].find(search_path)
         test_str = options[:test] ? '-nv' : ''
 
         includes_str = "--include-from='#{tmp_include_file}'"
-        cmd = "rsync -atAXmPL --progress #{test_str} --include-from='#{tmp_include_file}' --exclude='*' #{source}/ #{target}/ #{other_rsync_args}"
+        cmd = "rsync -avztAXHP --progress #{test_str} --include-from='#{tmp_include_file}' --exclude='*' #{source}/ #{target}/ #{other_rsync_args}"
 
         cmd << " && rm -Rf #{source}" if options[:delete]
 

data/share/rbbt_commands/migrate

@@ -94,7 +94,7 @@ real_paths.each do |source|
 
   target = [options[:target], target] * ":" if options[:target]
 
-  cmd = "rsync -atAX #{test_str} #{excludes_str} #{source} #{target} #{other * " "}"
+  cmd = "rsync -avztAXHP --copy-unsafe-links #{test_str} #{excludes_str} #{source} #{target} #{other * " "}"
 
   cmd << " && rm -Rf #{source}" if options[:delete]
 

data/share/rbbt_commands/purge_job

@@ -13,8 +13,6 @@ Remove a job and its dependencies
 
 $ rbbt purge [options] <job_path> 
 
-You can specify extra rsync options after --
-
 -h--help Print this help
 -t--test Do a verbose dry run
 -r--relocate Include relocated dependencies

data/share/rbbt_commands/rsync

@@ -37,7 +37,7 @@ test_str = options[:test] ? '-nv' : ''
 
 source, target, _sep, *other = ARGV
 
-cmd = "rsync -atAX #{test_str} #{excludes_str} #{source} #{target} #{other * " "}"
+cmd = "rsync -avztAXHP --copy-unsafe-links #{test_str} #{excludes_str} #{source} #{target} #{other * " "}"
 
 if options[:print]
   puts cmd 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.26.104
+  version: 5.26.105
 platform: ruby
 authors:
 - Miguel Vazquez