rbbt-util 5.25.53 → 5.25.55
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- checksums.yaml +4 -4
- data/lib/rbbt/hpc.rb +3 -2
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 1bf6ce754a18b149c9fe40bd0bf8db18f73a7270
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4
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+
data.tar.gz: b4ea2bebd14bb22bdb93c3f24269d0b52b5f644f
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5
5
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SHA512:
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|
6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: e02a75730174e0dbb073b61e21bd529ee093f8276a94c290c6cb9530ccb1b27aa8529ecefea4c816c1f740a5f911730de04d77e2d6884130f73bba1a628e5800
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|
7
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+
data.tar.gz: 3e29364d145052242a2d0acd9ffd84c0786f4febde6dac67554c19eeaa626ab89edd2235e43a42b2f1d3f431db72535da5fd9d7dd7c4d4862a5032165c9d5a73
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data/lib/rbbt/hpc.rb
CHANGED
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@@ -114,6 +114,7 @@ mkdir -p "$SINGULARITY_RUBY_INLINE"
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|
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114
114
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end
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115
115
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116
116
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if contain
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117
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+
user = ENV['USER'] || `whoami`.strip
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117
118
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env +=<<-EOF
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|
118
119
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119
120
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# Prepare container dir
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@@ -131,8 +132,8 @@ echo "rbbt_user: /home/rbbt/.rbbt/{TOPLEVEL}/{SUBPATH}" > $CONTAINER_DIR/.rbbt/e
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131
132
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echo "home: $CONTAINER_DIR/home/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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|
132
133
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echo "group_projects: $CONTAINER_DIR/projects/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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|
133
134
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echo "group_scratch: $CONTAINER_DIR/scratch/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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|
134
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-
echo "user_projects: $CONTAINER_DIR/projects/#{
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|
135
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-
echo "user_scratch: $CONTAINER_DIR/scratch/#{
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|
135
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+
echo "user_projects: $CONTAINER_DIR/projects/#{user}/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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|
136
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+
echo "user_scratch: $CONTAINER_DIR/scratch/#{user}/{PKGDIR}/{TOPLEVEL}/{SUBPATH}" >> $CONTAINER_DIR/.rbbt/etc/search_paths
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|
136
137
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echo "/scratch/tmp/rbbt/projects/rbbt/workflows/" > $CONTAINER_DIR/.rbbt/etc/workflow_dir
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|
137
138
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EOF
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|
138
139
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