rbbt-util 5.25.50 → 5.25.51
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- checksums.yaml +4 -4
- data/bin/rbbt +2 -0
- data/lib/rbbt/hpc.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
|
|
|
1
1
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---
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2
2
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SHA1:
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|
3
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-
metadata.gz:
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|
4
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-
data.tar.gz:
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|
3
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+
metadata.gz: 5b47e254bd279d704a14127a85db47696dc901bc
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|
4
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+
data.tar.gz: 2b119978b8fabb05fef21fc42368520a2c5fa1fe
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|
5
5
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SHA512:
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|
6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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|
6
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+
metadata.gz: a40d10503910a90ad89e8a1fe3bd3e889fa0703c5f03fc1e609f3dbcdd909307805bb2a97de8584cfe0f412957080a521dbb925791206b4da1aee5042638392a
|
|
7
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+
data.tar.gz: 1e518c9e52106e37e8595264db3337e0dd89c260f365c85febeb2cfc02fc4a331521ee869c38fb1363e035fae3bccda1ed5ef9f818b4932a58b3fa523d5c1ba4
|
data/bin/rbbt
CHANGED
|
@@ -100,6 +100,8 @@ end
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|
|
100
100
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if options[:config_keys]
|
|
101
101
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if Misc.is_filename?(options[:config_keys]) && File.exists?(options[:config_keys])
|
|
102
102
|
Rbbt::Config.load_file(options[:config_keys])
|
|
103
|
+
elsif Misc.is_filename?(options[:config_keys]) && Rbbt.etc.config_profile[options[:config_keys]].exists?
|
|
104
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+
Rbbt::Config.load_file(Rbbt.etc.config_profile[options[:config_keys]].find)
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|
103
105
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else
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|
104
106
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options[:config_keys].split(",").each do |config|
|
|
105
107
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key, value, *tokens = config.split(/\s/)
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data/lib/rbbt/hpc.rb
CHANGED
|
@@ -168,7 +168,7 @@ EOF
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|
|
168
168
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group = File.basename(File.dirname(ENV['HOME']))
|
|
169
169
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scratch_group_dir = File.join('/gpfs/scratch/', group)
|
|
170
170
|
projects_group_dir = File.join('/gpfs/projects/', group)
|
|
171
|
-
exec_cmd = %(singularity exec -e -C -H "$CONTAINER_DIR" -B /apps/ -B "$SINGULARITY_RUBY_INLINE":"$CONTAINER_DIR/.ruby_inline":rw -B ~/git:"$CONTAINER_DIR/git":ro -B #{scratch_group_dir}:"$CONTAINER_DIR/scratch":ro -B ~/.rbbt/software/opt/:"/opt/":ro -B ~/.rbbt:"$CONTAINER_DIR/home/":ro -B #{projects_group_dir}:"$CONTAINER_DIR/projects":ro "$SINGULARITY_IMG" env TMPDIR="$CONTAINER_DIR/.rbbt/tmp" env _JAVA_OPTIONS="-Xms1g -Xmx${MAX_MEMORY}m" rbbt)
|
|
171
|
+
exec_cmd = %(singularity exec -e -C -H "$CONTAINER_DIR" -B /scratch/tmp -B /apps/ -B "$SINGULARITY_RUBY_INLINE":"$CONTAINER_DIR/.ruby_inline":rw -B ~/git:"$CONTAINER_DIR/git":ro -B #{scratch_group_dir}:"$CONTAINER_DIR/scratch":ro -B ~/.rbbt/software/opt/:"/opt/":ro -B ~/.rbbt:"$CONTAINER_DIR/home/":ro -B #{projects_group_dir}:"$CONTAINER_DIR/projects":ro "$SINGULARITY_IMG" env TMPDIR="$CONTAINER_DIR/.rbbt/tmp" env _JAVA_OPTIONS="-Xms1g -Xmx${MAX_MEMORY}m" rbbt)
|
|
172
172
|
else
|
|
173
173
|
exec_cmd = %(singularity exec -e -B /apps/ -B "$SINGULARITY_RUBY_INLINE":"$HOME/.ruby_inline":rw "$SINGULARITY_IMG" env _JAVA_OPTIONS="-Xms1g -Xmx${MAX_MEMORY}m" rbbt)
|
|
174
174
|
end
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