rbbt-util 5.25.49 → 5.25.50
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/hpc.rb +3 -3
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: aadb9dd294b312fe70175aa1f186607ebb22deb0
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4
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data.tar.gz: 8bc279785325fdc7e36995bb74b297bd07253e00
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: f3476bdd30cb8cf959c1e121636c85fc96cddbd78d0b15809538ddeb6349cf273fb638616a9bf598a7bf9e5e5a9b57cc84335866823ff97081b2774de03cb895
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7
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+
data.tar.gz: 5bdf92fc041ecd0dc0fc7897c39e4d49e2230a11365f78dffd42531d25afee9da64634db4219fa4b49d517b1f258faf243326286ca02ae2aa379c2a57c12dbd6
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data/lib/rbbt/hpc.rb
CHANGED
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@@ -168,16 +168,16 @@ EOF
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168
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group = File.basename(File.dirname(ENV['HOME']))
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scratch_group_dir = File.join('/gpfs/scratch/', group)
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projects_group_dir = File.join('/gpfs/projects/', group)
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-
exec_cmd = %(singularity exec -e -C -H "$CONTAINER_DIR" -B /apps/ -B "$SINGULARITY_RUBY_INLINE":"$CONTAINER_DIR/.ruby_inline":rw -B ~/git:"$CONTAINER_DIR/git":ro -B #{scratch_group_dir}:"$CONTAINER_DIR/scratch":ro -B ~/.rbbt/software/opt/:"/opt/":ro -B ~/.rbbt:"$CONTAINER_DIR/home/":ro -B #{projects_group_dir}:"$CONTAINER_DIR/projects":ro "$SINGULARITY_IMG" env TMPDIR="$CONTAINER_DIR/.rbbt/tmp" env
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+
exec_cmd = %(singularity exec -e -C -H "$CONTAINER_DIR" -B /apps/ -B "$SINGULARITY_RUBY_INLINE":"$CONTAINER_DIR/.ruby_inline":rw -B ~/git:"$CONTAINER_DIR/git":ro -B #{scratch_group_dir}:"$CONTAINER_DIR/scratch":ro -B ~/.rbbt/software/opt/:"/opt/":ro -B ~/.rbbt:"$CONTAINER_DIR/home/":ro -B #{projects_group_dir}:"$CONTAINER_DIR/projects":ro "$SINGULARITY_IMG" env TMPDIR="$CONTAINER_DIR/.rbbt/tmp" env _JAVA_OPTIONS="-Xms1g -Xmx${MAX_MEMORY}m" rbbt)
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else
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-
exec_cmd = %(singularity exec -e -B /apps/ -B "$SINGULARITY_RUBY_INLINE":"$HOME/.ruby_inline":rw "$SINGULARITY_IMG" env
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+
exec_cmd = %(singularity exec -e -B /apps/ -B "$SINGULARITY_RUBY_INLINE":"$HOME/.ruby_inline":rw "$SINGULARITY_IMG" env _JAVA_OPTIONS="-Xms1g -Xmx${MAX_MEMORY}m" rbbt)
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end
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if development
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exec_cmd += ' --dev=git'
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end
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else
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-
exec_cmd = %(env
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+
exec_cmd = %(env _JAVA_OPTIONS="-Xms1g -Xmx${MAX_MEMORY}m" ~/git/rbbt-util/bin/rbbt --dev=~/git/)
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end
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