rbbt-util 5.25.47 → 5.25.48
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/util/misc/omics.rb +0 -1
- data/share/rbbt_commands/workflow/trace +10 -6
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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SHA1:
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3
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metadata.gz:
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4
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data.tar.gz:
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metadata.gz: 46222cc21bab86e8e9d9783431a1607aeb2b3a8d
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4
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data.tar.gz: c9912dfa07e5bef78b599ef53cf765033d5fa098
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: fe49673ea95fc2d2715459070c1c8e77af47b0281560b4663251980daf074b642c3077ff8c8b35609eeadbff35f78299abcb149b556c53e5fcf3c1ef6963090c
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7
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data.tar.gz: 10fc19079bd5de99f8b21e5ef2b23435a9a2452c99f82c95c98c6c6810947853795fd0250ae6172a0de0bda04d9fe9daefe708dc9f2d1b6974141b23c33f7f8f
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data/lib/rbbt/util/misc/omics.rb
CHANGED
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@@ -372,7 +372,6 @@ module Misc
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def self.genomic_location_cmp_contigs(gpos1, gpos2, contigs, sep = ":")
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chr1, _sep, pos1 = gpos1.partition(sep)
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chr2, _sep, pos2 = gpos2.partition(sep)
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iii [gpos1, gpos2, chr1, chr2]
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cmp = chr_cmp_contigs(chr1, chr2, contigs)
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case cmp
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when 0
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@@ -21,18 +21,22 @@ Examine the provenance of a job result
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$ rbbt workflow trace <job-result> <file.png>
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-h--help Help
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-
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-w--width* Image Width
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-h--height* Image Height
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-s--size* Image Size (Height and Width)
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EOF
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SOPT.usage if options[:help]
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$inputs = (options[:inputs] || "").split(",")
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$info_fields = (options[:info_fields] || "").split(",")
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-
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file = ARGV.shift || "/home/mvazque2/.rbbt/var/jobs/Sample/haplotype/NA12878"
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plot = ARGV.shift || "/tmp/plot.png"
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width, height, size = options.values_at :width, :height, :size
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size = 800 if size.nil?
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width = size if width.nil?
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height = size if height.nil?
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$seen = []
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def get_step(file)
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file = File.expand_path(file)
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@@ -138,5 +142,5 @@ data.R <<-EOF, [:svg]
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labs(x=NULL, y=NULL) +
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theme_gantt() + theme(axis.text.x=element_text(angle=45, hjust=1))
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rbbt.png_plot('#{plot}', 'timeline', width
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rbbt.png_plot('#{plot}', 'timeline', width=#{width}, height=#{height})
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EOF
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