rbbt-util 5.25.47 → 5.25.48
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- checksums.yaml +4 -4
- data/lib/rbbt/util/misc/omics.rb +0 -1
- data/share/rbbt_commands/workflow/trace +10 -6
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 46222cc21bab86e8e9d9783431a1607aeb2b3a8d
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4
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+
data.tar.gz: c9912dfa07e5bef78b599ef53cf765033d5fa098
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: fe49673ea95fc2d2715459070c1c8e77af47b0281560b4663251980daf074b642c3077ff8c8b35609eeadbff35f78299abcb149b556c53e5fcf3c1ef6963090c
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7
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+
data.tar.gz: 10fc19079bd5de99f8b21e5ef2b23435a9a2452c99f82c95c98c6c6810947853795fd0250ae6172a0de0bda04d9fe9daefe708dc9f2d1b6974141b23c33f7f8f
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data/lib/rbbt/util/misc/omics.rb
CHANGED
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@@ -372,7 +372,6 @@ module Misc
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372
372
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def self.genomic_location_cmp_contigs(gpos1, gpos2, contigs, sep = ":")
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373
373
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chr1, _sep, pos1 = gpos1.partition(sep)
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374
374
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chr2, _sep, pos2 = gpos2.partition(sep)
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375
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-
iii [gpos1, gpos2, chr1, chr2]
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376
375
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cmp = chr_cmp_contigs(chr1, chr2, contigs)
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377
376
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case cmp
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378
377
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when 0
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@@ -21,18 +21,22 @@ Examine the provenance of a job result
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21
21
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$ rbbt workflow trace <job-result> <file.png>
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22
22
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23
23
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-h--help Help
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24
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-
-
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25
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-
-
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24
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+
-w--width* Image Width
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25
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+
-h--height* Image Height
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26
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+
-s--size* Image Size (Height and Width)
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26
27
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EOF
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27
28
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28
29
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SOPT.usage if options[:help]
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29
30
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30
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-
$inputs = (options[:inputs] || "").split(",")
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31
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-
$info_fields = (options[:info_fields] || "").split(",")
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32
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-
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33
31
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file = ARGV.shift || "/home/mvazque2/.rbbt/var/jobs/Sample/haplotype/NA12878"
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34
32
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plot = ARGV.shift || "/tmp/plot.png"
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35
33
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34
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+
width, height, size = options.values_at :width, :height, :size
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35
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+
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36
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+
size = 800 if size.nil?
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37
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+
width = size if width.nil?
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38
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+
height = size if height.nil?
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39
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+
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36
40
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$seen = []
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37
41
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def get_step(file)
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38
42
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file = File.expand_path(file)
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@@ -138,5 +142,5 @@ data.R <<-EOF, [:svg]
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138
142
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labs(x=NULL, y=NULL) +
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139
143
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theme_gantt() + theme(axis.text.x=element_text(angle=45, hjust=1))
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140
144
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141
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-
rbbt.png_plot('#{plot}', 'timeline', width
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|
145
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+
rbbt.png_plot('#{plot}', 'timeline', width=#{width}, height=#{height})
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142
146
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EOF
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