rbbt-util 5.21.87 → 5.21.89

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: d9d54cd91f619d9bead8d8d072f115eff635774b
+  metadata.gz: d5a5ab8b4aa58bad54d6716b49419cb715c6a161
+  data.tar.gz: 1dc0a78f1cb2b47a885f606a48e7c629fa415508
 SHA512:
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-  data.tar.gz: f5a050a28355d674cbb95d887686bb13a74feac6ecd1540548912acc34ac4442c829e103223871d9e98d2a925324562734c829237df05de924ae5bddebc04b10
+  metadata.gz: 2806f19bd8a01092da0aeb63064cb666c61fbdc298b741182c2f649cee70189d7da202cbfd0bf3c9d8d990b5ac70722cbe88cedc3bf9dc7a2812f695618aaf8e
+  data.tar.gz: 6673c36664b4674c1efed59f72b17cdcb0fa4c6cebf2be84bbbb25e158a90b2fdfce34bcc037b3493abee9ce7d9783605752b0f12ec5e51be531f92caf66dc40

data/lib/rbbt/tsv/manipulate.rb

@@ -692,9 +692,7 @@ module TSV
     self
   end
 
-
-  def transpose(key_field="Unkown ID")
-    raise "Transposing only works for TSVs of type :list" unless type == :list
+  def transpose_list(key_field="Unkown ID")
     new_fields = keys.dup
     new = self.annotate({})
     TSV.setup(new, :key_field => key_field, :fields => new_fields, :type => type, :filename => filename, :identifiers => identifiers)
@@ -710,4 +708,22 @@ module TSV
     new
   end
 
+  def transpose_double(key_field = "Unkown ID")
+    sep = "-!SEP--#{rand 10000}!-"
+    tmp = self.to_list{|v| v * sep}
+    new = tmp.transpose_list(key_field)
+    new.to_double{|v| v.split(sep)}
+  end
+
+  def transpose(key_field = "Unkown ID")
+    case type
+    when :list
+      transpose_list key_field
+    when :double
+      transpose_double key_field
+    else
+      raise "Transposing only works for TSVs of type :list or :double"
+    end
+  end
+
 end

data/lib/rbbt/util/R.rb

@@ -42,7 +42,12 @@ source('#{UTIL}');
     if monitor
       io = CMD.cmd('R --no-save --quiet', options.merge(:in => cmd, :pipe => true, :log => true))
       while line = io.gets
-        puts line
+        case monitor
+        when Proc
+          monitor.call line
+        else
+          Log.debug "R: " <<  line
+        end
       end
       nil
     else

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.21.87
+  version: 5.21.89
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-06-23 00:00:00.000000000 Z
+date: 2017-06-28 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake