rbbt-util 5.21.80 → 5.21.81

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: 2351b438d3a5f6f270e54643fd82b3d5466f8e69
+  metadata.gz: 766488431c24999dc06dbf6b06f7541e1ce0c0da
+  data.tar.gz: ef2edb51a1ea3d2591ba43aa3350162a043724ac
 SHA512:
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-  data.tar.gz: ee4da1fc28221199b1418f868aff6324a6c4b9f21aa6293de2b4f3c2160b8613d172f40b9503748084382718eaa5bdf325795632eab79ae75b7f187989586ac1
+  metadata.gz: b902a43f746f2c0eb1b0340b320c149487c8bab0edaff78d21950296e0565955ca342a1624e0d1f38a2065dbe6a9f7e2ccf578dfe6f2043a531154628be35312
+  data.tar.gz: 9cb934bec141ad0870e3644d25bf5c31f19ea26427ce1a74f1991fcc56e0ea7fac3961b2f455ddcb838dac74ad3549f8155ecb5b5fd2576d7139e552624f702a

data/lib/rbbt/tsv/accessor.rb

@@ -563,7 +563,13 @@ module TSV
     options[:type] = :list if unmerge
 
     TSV::Dumper.stream options do |dumper|
-      dumper.init unless no_options
+      case no_options
+      when FalseClass, nil
+        dumper.init
+      when Hash
+        dumper.init(no_options)
+      end
+
       begin
         if keys
           keys.each do |key|
@@ -598,7 +604,7 @@ module TSV
   end
 
   def to_s(keys = nil, no_options = false, unmerge = false)
-    if FalseClass === keys or TrueClass === keys
+    if FalseClass === keys or TrueClass === keys or Hash === keys
       no_options = keys
       keys = nil
     end

data/lib/rbbt/util/R/eval.rb

@@ -90,9 +90,11 @@ module R
                            $stdout.reopen File.new('/dev/null', 'w')
                            exec(ENV, cmd)
                          end
-                         while not File.exist? pid_file
-                           sleep 0.5
+
+                         Misc.insist(10, 0.5, false) do
+                           raise "Rserve did not start" unless File.exist? pid_file
                          end
+
                          @@instance_process = Open.read(pid_file).to_i
                          Log.info "New Rserver session stated with PID (#{sh_pid}) #{@@instance_process}: #{SESSION}"
                        end

data/lib/rbbt/util/misc/development.rb

@@ -158,6 +158,8 @@ def self.add_libdir(dir=nil)
     rescue Exception
       if msg
         Log.warn("Insisting after exception: #{$!.class} #{$!.message} -- #{msg}")
+      elsif FalseClass === msg
+        nil
       else
         Log.warn("Insisting after exception:  #{$!.class} #{$!.message}")
       end

data/lib/rbbt/util/misc/pipes.rb

@@ -267,8 +267,12 @@ module Misc
     end
 
     if in_thread
-      Thread.new do
-        consume_stream(io, false, into, into_close)
+      Thread.new(Thread.current) do |parent|
+        begin
+          consume_stream(io, false, into, into_close)
+        rescue Exception
+          parent.raise $!
+        end
       end
     else
       if into
@@ -279,7 +283,11 @@ module Misc
 
       begin
         into = into.find if Path === into
-        into_path, into = into, Open.open(into, :mode => 'w') if String === into 
+        if String === into 
+          dir = File.dirname(into)
+          FileUtils.mkdir_p dir unless Open.exists?(dir)
+          into_path, into = into, Open.open(into, :mode => 'w') 
+        end
         into.sync = true if IO === into
         into_close = false unless into.respond_to? :close
         io.sync = true
@@ -304,7 +312,6 @@ module Misc
       rescue Exception
         Log.medium "Exception consuming stream: #{Misc.fingerprint io}: #{$!.message}"
         io.abort $! if io.respond_to? :abort
-        #io.close unless io.closed?
         FileUtils.rm into_path if into_path and File.exists? into_path
         raise $!
       end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.21.80
+  version: 5.21.81
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-04-28 00:00:00.000000000 Z
+date: 2017-05-11 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake