rbbt-util 5.21.26 → 5.21.27
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- checksums.yaml +4 -4
- data/lib/rbbt/monitor.rb +3 -1
- metadata +62 -62
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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|
1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
|
+
metadata.gz: 40f9bb08c54a27e06055961dd893ebf8cfecc0ed
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4
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+
data.tar.gz: c1519c4b9407a1a13ed228961c26789f15662f0a
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5
5
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SHA512:
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6
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-
metadata.gz:
|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 45f589c3a2e3157f4627510ef44067117f7b80e94a34d102eb40ce3f3fc96a0bfcb63ca1b0d1d05b28c530b343f9d89da453d235d552bc13f557ae4f95659f3c
|
7
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+
data.tar.gz: ab8ed64d6c46c92e6920a1d9e137943067a10b5886bf6991149802405425245796893ba4d98aae606b58cdf316458e368ba0e4d440769144907ab6d5c740c1ac
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data/lib/rbbt/monitor.rb
CHANGED
@@ -134,6 +134,7 @@ module Rbbt
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134
134
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|
135
135
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jobs = {}
|
136
136
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seen = Set.new
|
137
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+
_files = Set.new
|
137
138
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dirs.collect do |dir|
|
138
139
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next unless Open.exists? dir
|
139
140
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|
@@ -148,6 +149,7 @@ module Rbbt
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|
148
149
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cmd = "find '#{ taskdir }/' -not -type d -not -path '*/*.files/*' -not -path '*/*.pid' 2>/dev/null"
|
149
150
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files = CMD.cmd(cmd, :pipe => true)
|
150
151
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TSV.traverse files, :type => :array, :into => jobs, :_bar => "Finding jobs in #{ taskdir }" do |file|
|
152
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+
_files << file
|
151
153
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if m = file.match(/(.*).(info|pid)$/)
|
152
154
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file = m[1]
|
153
155
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end
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@@ -163,7 +165,7 @@ module Rbbt
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|
163
165
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info[:task] = task
|
164
166
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info[:name] = name
|
165
167
|
|
166
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-
if
|
168
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+
if File.exists? file
|
167
169
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info = info.merge(file_time(file))
|
168
170
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info[:done] = true
|
169
171
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info[:info_file] = File.exist?(info_file) ? info_file : nil
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metadata
CHANGED
@@ -1,7 +1,7 @@
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|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: rbbt-util
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 5.21.
|
4
|
+
version: 5.21.27
|
5
5
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platform: ruby
|
6
6
|
authors:
|
7
7
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- Miguel Vazquez
|
@@ -487,82 +487,82 @@ signing_key:
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|
487
487
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specification_version: 4
|
488
488
|
summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
|
489
489
|
test_files:
|
490
|
-
- test/
|
490
|
+
- test/rbbt/test_workflow.rb
|
491
491
|
- test/rbbt/resource/test_path.rb
|
492
|
-
- test/rbbt/association/test_item.rb
|
493
|
-
- test/rbbt/association/test_database.rb
|
494
|
-
- test/rbbt/association/test_open.rb
|
495
|
-
- test/rbbt/association/test_index.rb
|
496
|
-
- test/rbbt/association/test_util.rb
|
497
|
-
- test/rbbt/util/test_concurrency.rb
|
498
|
-
- test/rbbt/util/test_log.rb
|
499
|
-
- test/rbbt/util/test_chain_methods.rb
|
500
|
-
- test/rbbt/util/test_simpleopt.rb
|
501
|
-
- test/rbbt/util/simpleopt/test_parse.rb
|
502
|
-
- test/rbbt/util/simpleopt/test_get.rb
|
503
|
-
- test/rbbt/util/simpleopt/test_setup.rb
|
504
492
|
- test/rbbt/util/test_cmd.rb
|
505
|
-
- test/rbbt/util/
|
506
|
-
- test/rbbt/util/
|
507
|
-
- test/rbbt/util/
|
508
|
-
- test/rbbt/util/
|
509
|
-
- test/rbbt/util/test_tmpfile.rb
|
510
|
-
- test/rbbt/util/test_open.rb
|
511
|
-
- test/rbbt/util/test_filecache.rb
|
512
|
-
- test/rbbt/util/R/test_eval.rb
|
513
|
-
- test/rbbt/util/R/test_model.rb
|
493
|
+
- test/rbbt/util/simpleopt/test_setup.rb
|
494
|
+
- test/rbbt/util/simpleopt/test_get.rb
|
495
|
+
- test/rbbt/util/simpleopt/test_parse.rb
|
496
|
+
- test/rbbt/util/test_chain_methods.rb
|
514
497
|
- test/rbbt/util/test_simpleDSL.rb
|
515
|
-
- test/rbbt/util/
|
516
|
-
- test/rbbt/util/
|
517
|
-
- test/rbbt/util/test_R.rb
|
498
|
+
- test/rbbt/util/test_log.rb
|
499
|
+
- test/rbbt/util/test_open.rb
|
518
500
|
- test/rbbt/util/misc/test_lock.rb
|
519
|
-
- test/rbbt/util/misc/
|
501
|
+
- test/rbbt/util/misc/test_multipart_payload.rb
|
520
502
|
- test/rbbt/util/misc/test_bgzf.rb
|
503
|
+
- test/rbbt/util/misc/test_pipes.rb
|
521
504
|
- test/rbbt/util/misc/test_omics.rb
|
522
|
-
- test/rbbt/util/
|
505
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+
- test/rbbt/util/test_concurrency.rb
|
506
|
+
- test/rbbt/util/test_R.rb
|
507
|
+
- test/rbbt/util/log/test_progress.rb
|
508
|
+
- test/rbbt/util/test_colorize.rb
|
509
|
+
- test/rbbt/util/test_simpleopt.rb
|
523
510
|
- test/rbbt/util/test_excel2tsv.rb
|
511
|
+
- test/rbbt/util/test_filecache.rb
|
512
|
+
- test/rbbt/util/concurrency/test_processes.rb
|
513
|
+
- test/rbbt/util/concurrency/test_threads.rb
|
514
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+
- test/rbbt/util/concurrency/processes/test_socket.rb
|
515
|
+
- test/rbbt/util/test_semaphore.rb
|
524
516
|
- test/rbbt/util/test_misc.rb
|
517
|
+
- test/rbbt/util/test_tmpfile.rb
|
518
|
+
- test/rbbt/util/R/test_model.rb
|
519
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+
- test/rbbt/util/R/test_eval.rb
|
520
|
+
- test/rbbt/test_packed_index.rb
|
521
|
+
- test/rbbt/entity/test_identifiers.rb
|
522
|
+
- test/rbbt/test_association.rb
|
523
|
+
- test/rbbt/knowledge_base/test_traverse.rb
|
524
|
+
- test/rbbt/knowledge_base/test_registry.rb
|
525
|
+
- test/rbbt/knowledge_base/test_entity.rb
|
526
|
+
- test/rbbt/knowledge_base/test_enrichment.rb
|
527
|
+
- test/rbbt/knowledge_base/test_syndicate.rb
|
528
|
+
- test/rbbt/knowledge_base/test_query.rb
|
529
|
+
- test/rbbt/test_resource.rb
|
525
530
|
- test/rbbt/test_entity.rb
|
531
|
+
- test/rbbt/test_knowledge_base.rb
|
532
|
+
- test/rbbt/annotations/test_util.rb
|
533
|
+
- test/rbbt/association/test_index.rb
|
534
|
+
- test/rbbt/association/test_item.rb
|
535
|
+
- test/rbbt/association/test_open.rb
|
536
|
+
- test/rbbt/association/test_util.rb
|
537
|
+
- test/rbbt/association/test_database.rb
|
538
|
+
- test/rbbt/test_tsv.rb
|
526
539
|
- test/rbbt/workflow/step/test_dependencies.rb
|
527
|
-
- test/rbbt/workflow/test_doc.rb
|
528
|
-
- test/rbbt/workflow/test_step.rb
|
529
540
|
- test/rbbt/workflow/test_task.rb
|
530
|
-
- test/rbbt/
|
531
|
-
- test/rbbt/
|
532
|
-
- test/rbbt/
|
533
|
-
- test/rbbt/
|
541
|
+
- test/rbbt/workflow/test_step.rb
|
542
|
+
- test/rbbt/workflow/test_doc.rb
|
543
|
+
- test/rbbt/test_monitor.rb
|
544
|
+
- test/rbbt/test_persist.rb
|
545
|
+
- test/rbbt/test_annotations.rb
|
546
|
+
- test/rbbt/persist/test_tsv.rb
|
547
|
+
- test/rbbt/persist/tsv/test_lmdb.rb
|
548
|
+
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
549
|
+
- test/rbbt/persist/tsv/test_sharder.rb
|
550
|
+
- test/rbbt/persist/tsv/test_cdb.rb
|
551
|
+
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
552
|
+
- test/rbbt/persist/tsv/test_leveldb.rb
|
553
|
+
- test/rbbt/tsv/test_field_index.rb
|
534
554
|
- test/rbbt/tsv/test_parallel.rb
|
535
|
-
- test/rbbt/tsv/
|
555
|
+
- test/rbbt/tsv/test_index.rb
|
556
|
+
- test/rbbt/tsv/test_matrix.rb
|
536
557
|
- test/rbbt/tsv/test_change_id.rb
|
558
|
+
- test/rbbt/tsv/test_parser.rb
|
537
559
|
- test/rbbt/tsv/test_stream.rb
|
560
|
+
- test/rbbt/tsv/test_util.rb
|
561
|
+
- test/rbbt/tsv/test_accessor.rb
|
538
562
|
- test/rbbt/tsv/test_filter.rb
|
539
|
-
- test/rbbt/tsv/test_matrix.rb
|
540
563
|
- test/rbbt/tsv/test_attach.rb
|
541
564
|
- test/rbbt/tsv/test_manipulate.rb
|
542
|
-
- test/rbbt/tsv/
|
543
|
-
- test/rbbt/tsv/
|
544
|
-
- test/rbbt/tsv/test_util.rb
|
545
|
-
- test/rbbt/tsv/test_parser.rb
|
546
|
-
- test/rbbt/test_packed_index.rb
|
547
|
-
- test/rbbt/test_persist.rb
|
565
|
+
- test/rbbt/tsv/parallel/test_through.rb
|
566
|
+
- test/rbbt/tsv/parallel/test_traverse.rb
|
548
567
|
- test/rbbt/test_fix_width_table.rb
|
549
|
-
- test/
|
550
|
-
- test/rbbt/knowledge_base/test_entity.rb
|
551
|
-
- test/rbbt/knowledge_base/test_query.rb
|
552
|
-
- test/rbbt/knowledge_base/test_enrichment.rb
|
553
|
-
- test/rbbt/knowledge_base/test_syndicate.rb
|
554
|
-
- test/rbbt/knowledge_base/test_registry.rb
|
555
|
-
- test/rbbt/entity/test_identifiers.rb
|
556
|
-
- test/rbbt/test_monitor.rb
|
557
|
-
- test/rbbt/test_workflow.rb
|
558
|
-
- test/rbbt/test_annotations.rb
|
559
|
-
- test/rbbt/annotations/test_util.rb
|
560
|
-
- test/rbbt/test_resource.rb
|
561
|
-
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
562
|
-
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
563
|
-
- test/rbbt/persist/tsv/test_lmdb.rb
|
564
|
-
- test/rbbt/persist/tsv/test_leveldb.rb
|
565
|
-
- test/rbbt/persist/tsv/test_cdb.rb
|
566
|
-
- test/rbbt/persist/tsv/test_sharder.rb
|
567
|
-
- test/rbbt/persist/test_tsv.rb
|
568
|
-
- test/rbbt/test_tsv.rb
|
568
|
+
- test/test_helper.rb
|