rbbt-util 5.21.134 → 5.21.135

checksums.yaml

@@ -1,7 +1,7 @@
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data/share/rbbt_commands/system/clean

@@ -16,6 +16,7 @@ $ rbbt system clean <workflow> <task>
 -a--all Apply to all jobs, not only uncompleted
 -f--force Remove locks and files regardless of been active
 -q--quick Quick check
+-d--dirty Clean dirty jobs
 -h--help Print this help
 EOF
 rbbt_usage and exit 0 if options[:help]
@@ -27,6 +28,7 @@ task = task.split "," if task
 
 all = options.delete :all
 force = options.delete :force
+dirty = options.delete :dirty
 
 puts Log.color(:magenta, "# System clean")
 
@@ -96,10 +98,12 @@ TSV.traverse jobs, :_bar => "Checking job status" do |file,i|
     status = :dead if status != "done" and pid and not Misc.pid_exists?(pid)
     status = :sync if status != "done" and File.exist? file
 
+    status = :dirty if info[:status] == "done" and dirty and Workflow.load_step(file).dirty?
+
     status = status.to_s
   end
 
-  next unless (force and status !~ /done/) or status =~ /\bnopid/ or status =~ /\berror$/ or status =~ /\bmissing$/ or status =~ /\baborted$/ or status =~ /\bdead$/ or status =~ /\bsync$/ or status == "" 
+  next unless (force and status !~ /done/) or status == 'dirty' or status =~ /\bnopid/ or status =~ /\berror$/ or status =~ /\bmissing$/ or status =~ /\baborted$/ or status =~ /\bdead$/ or status =~ /\bsync$/ or status == "" 
   puts "  Removing #{ file } - #{status}" 
   Step.clean(file) 
 end

data/share/rbbt_commands/system/status

@@ -163,6 +163,7 @@ workflows.sort.each do |workflow,tasks|
           end
         end
         str << " #{ status_msg status }"
+        str << " (dirty)" if status == 'done' && Workflow.load_step(file).dirty?
 
         if inputs and inputs.any? and info[:inputs]
           job_inputs = info[:inputs]

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.21.134
+  version: 5.21.135
 platform: ruby
 authors:
 - Miguel Vazquez