rbbt-util 5.21.119 → 5.21.120
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- checksums.yaml +4 -4
- data/lib/rbbt/workflow/step/run.rb +2 -0
- metadata +65 -65
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
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-
data.tar.gz:
|
3
|
+
metadata.gz: 3026f21eef1a3c2c1f1fc024bd95deecd9c52fce
|
4
|
+
data.tar.gz: 7b7cddc34c588b2895d524ee8713c47e84f68874
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: dee509e3a25d16c38e689251221de184cac742897c0d1ed34d4c6de3fe99dd34e8d632bd7c2488f17b571d1b312fb4c0ae08f88f50ecbccb6934ab8af58ed83d
|
7
|
+
data.tar.gz: 78e6e1a9065412d2a1b716801a8659f02302145150bd8819b04c3b5d9c05434727993769fba2869fdbe5859e13f8673030ac2ab4472802475d27b063eb792a42
|
@@ -358,6 +358,8 @@ class Step
|
|
358
358
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end
|
359
359
|
log :done, "Completed step #{Log.color :yellow, task.name.to_s || ""} in #{time_elapsed.to_i}+#{(total_time_elapsed - time_elapsed).to_i} sec." unless stream or time_elapsed.nil?
|
360
360
|
res
|
361
|
+
rescue DependencyError
|
362
|
+
exception $!
|
361
363
|
rescue Aborted, Interrupt
|
362
364
|
abort
|
363
365
|
stop_dependencies
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
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name: rbbt-util
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 5.21.
|
4
|
+
version: 5.21.120
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2017-12-
|
11
|
+
date: 2017-12-28 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rake
|
@@ -503,88 +503,88 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
503
503
|
version: '0'
|
504
504
|
requirements: []
|
505
505
|
rubyforge_project:
|
506
|
-
rubygems_version: 2.6.
|
506
|
+
rubygems_version: 2.6.8
|
507
507
|
signing_key:
|
508
508
|
specification_version: 4
|
509
509
|
summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
|
510
510
|
test_files:
|
511
|
-
- test/
|
512
|
-
- test/rbbt/
|
513
|
-
- test/rbbt/
|
514
|
-
- test/rbbt/
|
515
|
-
- test/rbbt/
|
516
|
-
- test/rbbt/
|
517
|
-
- test/rbbt/
|
518
|
-
- test/rbbt/
|
519
|
-
- test/rbbt/
|
520
|
-
- test/rbbt/
|
521
|
-
- test/rbbt/
|
522
|
-
- test/rbbt/
|
523
|
-
- test/rbbt/
|
524
|
-
- test/rbbt/
|
525
|
-
- test/rbbt/util/R/test_eval.rb
|
526
|
-
- test/rbbt/util/R/test_model.rb
|
527
|
-
- test/rbbt/util/test_log.rb
|
528
|
-
- test/rbbt/util/test_simpleDSL.rb
|
529
|
-
- test/rbbt/util/log/test_progress.rb
|
530
|
-
- test/rbbt/util/test_tmpfile.rb
|
511
|
+
- test/test_helper.rb
|
512
|
+
- test/rbbt/test_annotations.rb
|
513
|
+
- test/rbbt/association/test_database.rb
|
514
|
+
- test/rbbt/association/test_item.rb
|
515
|
+
- test/rbbt/association/test_index.rb
|
516
|
+
- test/rbbt/association/test_open.rb
|
517
|
+
- test/rbbt/association/test_util.rb
|
518
|
+
- test/rbbt/test_association.rb
|
519
|
+
- test/rbbt/knowledge_base/test_syndicate.rb
|
520
|
+
- test/rbbt/knowledge_base/test_enrichment.rb
|
521
|
+
- test/rbbt/knowledge_base/test_query.rb
|
522
|
+
- test/rbbt/knowledge_base/test_entity.rb
|
523
|
+
- test/rbbt/knowledge_base/test_registry.rb
|
524
|
+
- test/rbbt/knowledge_base/test_traverse.rb
|
531
525
|
- test/rbbt/util/test_R.rb
|
532
|
-
- test/rbbt/util/
|
526
|
+
- test/rbbt/util/test_tmpfile.rb
|
527
|
+
- test/rbbt/util/test_filecache.rb
|
533
528
|
- test/rbbt/util/test_misc.rb
|
534
|
-
- test/rbbt/util/
|
535
|
-
- test/rbbt/util/
|
529
|
+
- test/rbbt/util/test_excel2tsv.rb
|
530
|
+
- test/rbbt/util/log/test_progress.rb
|
531
|
+
- test/rbbt/util/misc/test_multipart_payload.rb
|
532
|
+
- test/rbbt/util/misc/test_pipes.rb
|
533
|
+
- test/rbbt/util/misc/test_bgzf.rb
|
534
|
+
- test/rbbt/util/misc/test_lock.rb
|
535
|
+
- test/rbbt/util/misc/test_omics.rb
|
536
|
+
- test/rbbt/util/test_semaphore.rb
|
537
|
+
- test/rbbt/util/simpleopt/test_get.rb
|
536
538
|
- test/rbbt/util/simpleopt/test_parse.rb
|
537
539
|
- test/rbbt/util/simpleopt/test_setup.rb
|
538
|
-
- test/rbbt/util/
|
539
|
-
- test/rbbt/util/test_filecache.rb
|
540
|
+
- test/rbbt/util/test_open.rb
|
540
541
|
- test/rbbt/util/concurrency/test_processes.rb
|
541
542
|
- test/rbbt/util/concurrency/test_threads.rb
|
542
543
|
- test/rbbt/util/concurrency/processes/test_socket.rb
|
543
|
-
- test/rbbt/util/
|
544
|
+
- test/rbbt/util/test_log.rb
|
545
|
+
- test/rbbt/util/test_colorize.rb
|
546
|
+
- test/rbbt/util/test_cmd.rb
|
547
|
+
- test/rbbt/util/test_concurrency.rb
|
548
|
+
- test/rbbt/util/R/test_eval.rb
|
549
|
+
- test/rbbt/util/R/test_model.rb
|
550
|
+
- test/rbbt/util/test_simpleopt.rb
|
544
551
|
- test/rbbt/util/test_chain_methods.rb
|
545
|
-
- test/rbbt/
|
546
|
-
- test/rbbt/
|
547
|
-
- test/rbbt/tsv/test_change_id.rb
|
548
|
-
- test/rbbt/tsv/test_attach.rb
|
549
|
-
- test/rbbt/tsv/test_filter.rb
|
552
|
+
- test/rbbt/util/test_simpleDSL.rb
|
553
|
+
- test/rbbt/tsv/test_index.rb
|
550
554
|
- test/rbbt/tsv/test_parser.rb
|
551
|
-
- test/rbbt/tsv/test_accessor.rb
|
552
|
-
- test/rbbt/tsv/test_matrix.rb
|
553
555
|
- test/rbbt/tsv/test_field_index.rb
|
554
|
-
- test/rbbt/tsv/
|
555
|
-
- test/rbbt/tsv/
|
556
|
+
- test/rbbt/tsv/test_stream.rb
|
557
|
+
- test/rbbt/tsv/test_accessor.rb
|
558
|
+
- test/rbbt/tsv/test_change_id.rb
|
556
559
|
- test/rbbt/tsv/test_parallel.rb
|
557
|
-
- test/rbbt/tsv/test_manipulate.rb
|
558
|
-
- test/rbbt/tsv/test_excel.rb
|
559
560
|
- test/rbbt/tsv/parallel/test_through.rb
|
560
561
|
- test/rbbt/tsv/parallel/test_traverse.rb
|
561
|
-
- test/rbbt/tsv/
|
562
|
-
- test/rbbt/
|
563
|
-
- test/rbbt/
|
564
|
-
- test/rbbt/
|
565
|
-
- test/rbbt/
|
566
|
-
- test/rbbt/
|
567
|
-
- test/rbbt/
|
568
|
-
- test/rbbt/
|
569
|
-
- test/rbbt/
|
562
|
+
- test/rbbt/tsv/test_manipulate.rb
|
563
|
+
- test/rbbt/tsv/test_filter.rb
|
564
|
+
- test/rbbt/tsv/test_matrix.rb
|
565
|
+
- test/rbbt/tsv/test_util.rb
|
566
|
+
- test/rbbt/tsv/test_attach.rb
|
567
|
+
- test/rbbt/tsv/test_excel.rb
|
568
|
+
- test/rbbt/test_monitor.rb
|
569
|
+
- test/rbbt/test_workflow.rb
|
570
|
+
- test/rbbt/annotations/test_util.rb
|
571
|
+
- test/rbbt/test_packed_index.rb
|
572
|
+
- test/rbbt/workflow/test_task.rb
|
573
|
+
- test/rbbt/workflow/test_doc.rb
|
574
|
+
- test/rbbt/workflow/test_step.rb
|
575
|
+
- test/rbbt/workflow/step/test_dependencies.rb
|
576
|
+
- test/rbbt/entity/test_identifiers.rb
|
577
|
+
- test/rbbt/test_entity.rb
|
578
|
+
- test/rbbt/test_resource.rb
|
579
|
+
- test/rbbt/test_persist.rb
|
580
|
+
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
570
581
|
- test/rbbt/persist/tsv/test_cdb.rb
|
571
|
-
- test/rbbt/persist/tsv/test_lmdb.rb
|
572
|
-
- test/rbbt/persist/tsv/test_sharder.rb
|
573
582
|
- test/rbbt/persist/tsv/test_leveldb.rb
|
574
|
-
- test/rbbt/persist/tsv/
|
583
|
+
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
584
|
+
- test/rbbt/persist/tsv/test_sharder.rb
|
585
|
+
- test/rbbt/persist/tsv/test_lmdb.rb
|
575
586
|
- test/rbbt/persist/test_tsv.rb
|
576
587
|
- test/rbbt/test_tsv.rb
|
577
|
-
- test/rbbt/test_annotations.rb
|
578
588
|
- test/rbbt/test_fix_width_table.rb
|
579
|
-
- test/rbbt/
|
580
|
-
- test/rbbt/
|
581
|
-
- test/rbbt/annotations/test_util.rb
|
582
|
-
- test/rbbt/test_monitor.rb
|
583
|
-
- test/rbbt/test_persist.rb
|
584
|
-
- test/rbbt/knowledge_base/test_entity.rb
|
585
|
-
- test/rbbt/knowledge_base/test_registry.rb
|
586
|
-
- test/rbbt/knowledge_base/test_syndicate.rb
|
587
|
-
- test/rbbt/knowledge_base/test_query.rb
|
588
|
-
- test/rbbt/knowledge_base/test_enrichment.rb
|
589
|
-
- test/rbbt/knowledge_base/test_traverse.rb
|
590
|
-
- test/test_helper.rb
|
589
|
+
- test/rbbt/test_knowledge_base.rb
|
590
|
+
- test/rbbt/resource/test_path.rb
|