rbbt-util 5.21.11 → 5.21.12
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- checksums.yaml +4 -4
- data/etc/app.d/finder.rb +0 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: cbd4d23a38b98c466d3ab1b72ffcfb73dfb95ca0
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4
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+
data.tar.gz: f653f6d7a27c46ccb033541dce6cc1856a4097f0
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 2ca5bf41660d16d1aad616fbf4031d70ba2ec8f5e80b2c595a245d4ddd3870d1589c1385cc21aefae6b83e9babb6c2693db8a3fa259bdfd76ae8720e27c186e1
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7
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+
data.tar.gz: 5e3e86e5620868874ef7f6b4d06ec635cfd7b186982043530ece3d26b22bccc6a9374ae6518fd4f01e6300a9f09ec925dcd55e1abbbe2fcbf5ca36c4804b1ceb
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data/etc/app.d/finder.rb
CHANGED
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@@ -2,7 +2,6 @@
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2
2
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finder = Finder.new
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3
3
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if ENV['RBBT_FINDER']
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4
4
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organism = Organism.default_code("Hsa")
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5
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-
finder.add_instance(KEGG.pathways, :grep => '^hsa\|^#', :fields => ["Pathway Name"], :namespace => organism, :fix => Proc.new{|l| l.sub(/ - Homo sapiens.*/,'')}) if defined? KEGG
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6
5
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finder.add_instance(Organism.lexicon(organism), :persist => true, :namespace => organism, :grep => Organism.blacklist_genes(organism).list, :invert_grep => true) if defined? Organism
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7
6
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8
7
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mutation_hash = {"Genomic Mutation" => /\w+:\d+:[ACTG\-\+]+/}
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