rbbt-util 5.21.106 → 5.21.107
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- checksums.yaml +4 -4
- data/lib/rbbt/workflow/step/dependencies.rb +6 -2
- metadata +65 -65
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: b175ea3910c3d5cf2fc2167e7f87cdb5661de0c8
|
4
|
+
data.tar.gz: 379089aea07b9e8351f8d9b2b92c69da8f796f3f
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 819d0cbb8955515cafe46354dc77a095353f1588ec08da00a3bd5f0d38553cb2cb3cb97db281960c254127fd62ff41b6d34748019f9de9acedec7faaac1c80de
|
7
|
+
data.tar.gz: 4c8f311f4e9cc10ce591ebb7aff8eab47b450c1715a2329eee865b678354192be542b9697750a0e8d11deb83cb23ba970f626a3a6cd682a1b5357dd73ff1cb8c
|
@@ -197,8 +197,12 @@ class Step
|
|
197
197
|
|
198
198
|
case type
|
199
199
|
when :canfail
|
200
|
-
list.each do |
|
201
|
-
|
200
|
+
list.each do |dep|
|
201
|
+
begin
|
202
|
+
dep.produce
|
203
|
+
rescue
|
204
|
+
Log.warn "Allowing failing of #{dep.path}: #{dep.messages.last}"
|
205
|
+
end
|
202
206
|
nil
|
203
207
|
end
|
204
208
|
when :produce, :no_dup
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rbbt-util
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 5.21.
|
4
|
+
version: 5.21.107
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2017-11-
|
11
|
+
date: 2017-11-20 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rake
|
@@ -503,88 +503,88 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
503
503
|
version: '0'
|
504
504
|
requirements: []
|
505
505
|
rubyforge_project:
|
506
|
-
rubygems_version: 2.6.
|
506
|
+
rubygems_version: 2.6.13
|
507
507
|
signing_key:
|
508
508
|
specification_version: 4
|
509
509
|
summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
|
510
510
|
test_files:
|
511
|
-
- test/
|
512
|
-
- test/rbbt/
|
513
|
-
- test/rbbt/
|
514
|
-
- test/rbbt/
|
515
|
-
- test/rbbt/
|
516
|
-
- test/rbbt/
|
517
|
-
- test/rbbt/
|
518
|
-
- test/rbbt/
|
519
|
-
- test/rbbt/knowledge_base/test_syndicate.rb
|
520
|
-
- test/rbbt/knowledge_base/test_enrichment.rb
|
521
|
-
- test/rbbt/knowledge_base/test_query.rb
|
522
|
-
- test/rbbt/knowledge_base/test_entity.rb
|
523
|
-
- test/rbbt/knowledge_base/test_registry.rb
|
524
|
-
- test/rbbt/knowledge_base/test_traverse.rb
|
525
|
-
- test/rbbt/util/test_R.rb
|
526
|
-
- test/rbbt/util/test_tmpfile.rb
|
527
|
-
- test/rbbt/util/test_filecache.rb
|
528
|
-
- test/rbbt/util/test_misc.rb
|
529
|
-
- test/rbbt/util/test_excel2tsv.rb
|
530
|
-
- test/rbbt/util/log/test_progress.rb
|
531
|
-
- test/rbbt/util/misc/test_multipart_payload.rb
|
511
|
+
- test/rbbt/test_entity.rb
|
512
|
+
- test/rbbt/workflow/test_doc.rb
|
513
|
+
- test/rbbt/workflow/test_step.rb
|
514
|
+
- test/rbbt/workflow/step/test_dependencies.rb
|
515
|
+
- test/rbbt/workflow/test_task.rb
|
516
|
+
- test/rbbt/resource/test_path.rb
|
517
|
+
- test/rbbt/util/test_colorize.rb
|
518
|
+
- test/rbbt/util/misc/test_omics.rb
|
532
519
|
- test/rbbt/util/misc/test_pipes.rb
|
533
|
-
- test/rbbt/util/misc/test_bgzf.rb
|
534
520
|
- test/rbbt/util/misc/test_lock.rb
|
535
|
-
- test/rbbt/util/misc/
|
536
|
-
- test/rbbt/util/
|
537
|
-
- test/rbbt/util/
|
521
|
+
- test/rbbt/util/misc/test_multipart_payload.rb
|
522
|
+
- test/rbbt/util/misc/test_bgzf.rb
|
523
|
+
- test/rbbt/util/test_concurrency.rb
|
524
|
+
- test/rbbt/util/test_cmd.rb
|
525
|
+
- test/rbbt/util/R/test_eval.rb
|
526
|
+
- test/rbbt/util/R/test_model.rb
|
527
|
+
- test/rbbt/util/test_log.rb
|
528
|
+
- test/rbbt/util/test_simpleDSL.rb
|
529
|
+
- test/rbbt/util/log/test_progress.rb
|
530
|
+
- test/rbbt/util/test_tmpfile.rb
|
531
|
+
- test/rbbt/util/test_R.rb
|
532
|
+
- test/rbbt/util/test_excel2tsv.rb
|
533
|
+
- test/rbbt/util/test_misc.rb
|
534
|
+
- test/rbbt/util/test_open.rb
|
535
|
+
- test/rbbt/util/test_simpleopt.rb
|
538
536
|
- test/rbbt/util/simpleopt/test_parse.rb
|
539
537
|
- test/rbbt/util/simpleopt/test_setup.rb
|
540
|
-
- test/rbbt/util/
|
538
|
+
- test/rbbt/util/simpleopt/test_get.rb
|
539
|
+
- test/rbbt/util/test_filecache.rb
|
541
540
|
- test/rbbt/util/concurrency/test_processes.rb
|
542
541
|
- test/rbbt/util/concurrency/test_threads.rb
|
543
542
|
- test/rbbt/util/concurrency/processes/test_socket.rb
|
544
|
-
- test/rbbt/util/
|
545
|
-
- test/rbbt/util/test_colorize.rb
|
546
|
-
- test/rbbt/util/test_cmd.rb
|
547
|
-
- test/rbbt/util/test_concurrency.rb
|
548
|
-
- test/rbbt/util/R/test_eval.rb
|
549
|
-
- test/rbbt/util/R/test_model.rb
|
550
|
-
- test/rbbt/util/test_simpleopt.rb
|
543
|
+
- test/rbbt/util/test_semaphore.rb
|
551
544
|
- test/rbbt/util/test_chain_methods.rb
|
552
|
-
- test/rbbt/
|
553
|
-
- test/rbbt/
|
554
|
-
- test/rbbt/tsv/test_parser.rb
|
555
|
-
- test/rbbt/tsv/test_field_index.rb
|
556
|
-
- test/rbbt/tsv/test_stream.rb
|
557
|
-
- test/rbbt/tsv/test_accessor.rb
|
545
|
+
- test/rbbt/test_resource.rb
|
546
|
+
- test/rbbt/test_packed_index.rb
|
558
547
|
- test/rbbt/tsv/test_change_id.rb
|
559
|
-
- test/rbbt/tsv/
|
560
|
-
- test/rbbt/tsv/parallel/test_through.rb
|
561
|
-
- test/rbbt/tsv/parallel/test_traverse.rb
|
562
|
-
- test/rbbt/tsv/test_manipulate.rb
|
548
|
+
- test/rbbt/tsv/test_attach.rb
|
563
549
|
- test/rbbt/tsv/test_filter.rb
|
550
|
+
- test/rbbt/tsv/test_parser.rb
|
551
|
+
- test/rbbt/tsv/test_accessor.rb
|
564
552
|
- test/rbbt/tsv/test_matrix.rb
|
553
|
+
- test/rbbt/tsv/test_field_index.rb
|
565
554
|
- test/rbbt/tsv/test_util.rb
|
566
|
-
- test/rbbt/tsv/
|
555
|
+
- test/rbbt/tsv/test_index.rb
|
556
|
+
- test/rbbt/tsv/test_parallel.rb
|
557
|
+
- test/rbbt/tsv/test_manipulate.rb
|
567
558
|
- test/rbbt/tsv/test_excel.rb
|
568
|
-
- test/rbbt/
|
569
|
-
- test/rbbt/
|
570
|
-
- test/rbbt/
|
571
|
-
- test/rbbt/
|
572
|
-
- test/rbbt/
|
573
|
-
- test/rbbt/
|
574
|
-
- test/rbbt/
|
575
|
-
- test/rbbt/
|
576
|
-
- test/rbbt/
|
577
|
-
- test/rbbt/
|
578
|
-
- test/rbbt/test_resource.rb
|
579
|
-
- test/rbbt/test_persist.rb
|
580
|
-
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
581
|
-
- test/rbbt/persist/tsv/test_cdb.rb
|
582
|
-
- test/rbbt/persist/tsv/test_leveldb.rb
|
559
|
+
- test/rbbt/tsv/parallel/test_through.rb
|
560
|
+
- test/rbbt/tsv/parallel/test_traverse.rb
|
561
|
+
- test/rbbt/tsv/test_stream.rb
|
562
|
+
- test/rbbt/test_association.rb
|
563
|
+
- test/rbbt/association/test_database.rb
|
564
|
+
- test/rbbt/association/test_item.rb
|
565
|
+
- test/rbbt/association/test_open.rb
|
566
|
+
- test/rbbt/association/test_util.rb
|
567
|
+
- test/rbbt/association/test_index.rb
|
568
|
+
- test/rbbt/test_knowledge_base.rb
|
583
569
|
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
584
|
-
- test/rbbt/persist/tsv/
|
570
|
+
- test/rbbt/persist/tsv/test_cdb.rb
|
585
571
|
- test/rbbt/persist/tsv/test_lmdb.rb
|
572
|
+
- test/rbbt/persist/tsv/test_sharder.rb
|
573
|
+
- test/rbbt/persist/tsv/test_leveldb.rb
|
574
|
+
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
586
575
|
- test/rbbt/persist/test_tsv.rb
|
587
576
|
- test/rbbt/test_tsv.rb
|
577
|
+
- test/rbbt/test_annotations.rb
|
588
578
|
- test/rbbt/test_fix_width_table.rb
|
589
|
-
- test/rbbt/
|
590
|
-
- test/rbbt/
|
579
|
+
- test/rbbt/test_workflow.rb
|
580
|
+
- test/rbbt/entity/test_identifiers.rb
|
581
|
+
- test/rbbt/annotations/test_util.rb
|
582
|
+
- test/rbbt/test_monitor.rb
|
583
|
+
- test/rbbt/test_persist.rb
|
584
|
+
- test/rbbt/knowledge_base/test_entity.rb
|
585
|
+
- test/rbbt/knowledge_base/test_registry.rb
|
586
|
+
- test/rbbt/knowledge_base/test_syndicate.rb
|
587
|
+
- test/rbbt/knowledge_base/test_query.rb
|
588
|
+
- test/rbbt/knowledge_base/test_enrichment.rb
|
589
|
+
- test/rbbt/knowledge_base/test_traverse.rb
|
590
|
+
- test/test_helper.rb
|