rbbt-util 5.21.99 → 5.21.100

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 7dd511eb01b14817584552dad9178ede2319c65b
-  data.tar.gz: 8931609250cca85686c0be1e35b3d9cdcba8aca6
+  metadata.gz: 88e29c1345bcc7c571585987bea350f115a4b1e2
+  data.tar.gz: e52d2d3e8c9e2369b43a418ec27a7b1d9d506881
 SHA512:
-  metadata.gz: 298f9fffa765f4eb2c2cd92a85289c148ab8e49d81e4a509341fd9256222cd8d3ff42fd81217d040241dd2960f4ff743853cf5ec0ad8ae12094dbca7d11e0e2e
-  data.tar.gz: 06ef1631872f80edce0c3dc759d650c83466666a70ec123242d0bcce6c7ea225417b5bcc8561ae285934ec8bfd570bb980ccccb1483128f7a16ce58444a5b9ab
+  metadata.gz: 8db2cbd99356b81a82baa0940bdce32325f86b0ed4f5b29e5db1ac1c5f726c4e7932bba0147b78712bf829da2c55fbea61c4c7fdf1806ebbbfec93b30fe72f93
+  data.tar.gz: 2e3b5796e6b93824392578e8e2ec9c30e9c561ee962086453c86dd3c390a30a284d0ac2680a0d652701ad7258252a522d72dfb96db465d471da1c9d858f2fbb4

data/lib/rbbt/resource/path.rb

@@ -3,9 +3,9 @@ require 'rbbt/util/misc/indiferent_hash'
 require 'yaml'
 
 module Path
-  attr_accessor :resource, :pkgdir, :original, :search_paths, :search_order
+  attr_accessor :resource, :pkgdir, :original, :search_paths, :search_order, :libdir
 
-  def self.setup(string, pkgdir = nil, resource = nil, search_paths = nil, search_order = nil)
+  def self.setup(string, pkgdir = nil, resource = nil, search_paths = nil, search_order = nil, libdir = nil)
     return string if string.nil?
     string = string.dup if string.frozen?
     string.extend Path
@@ -13,6 +13,7 @@ module Path
     string.resource = resource
     string.search_paths = search_paths
     string.search_order = search_order
+    string.libdir = libdir
     string
   end
 
@@ -44,7 +45,7 @@ module Path
 
   def annotate(name)
     name = name.to_s
-    name = Path.setup name, @pkgdir, @resource, @search_paths, @search_order
+    name = Path.setup name, @pkgdir, @resource, @search_paths, @search_order, @libdir
     name
   end
 
@@ -182,11 +183,12 @@ module Path
                        where = where.to_sym
                        raise "Did not recognize the 'where' tag: #{where}. Options: #{paths.keys}" unless paths.include? where
 
-                       if where == :lib
-                         libdir = Path.caller_lib_dir(caller_lib) || "NOLIBDIR"
+                       if where == :lib 
+                         libdir = @libdir || Path.caller_lib_dir(caller_lib) || "NOLIBDIR" 
                        else
                          libdir = "NOLIBDIR"
                        end
+
                        pwd = FileUtils.pwd
                        path = paths[where]
                        path = File.join(path, "{PATH}") unless path.include? "PATH}" or path.include? "{BASENAME}"

data/lib/rbbt/tsv/parallel/traverse.rb

@@ -254,7 +254,7 @@ module TSV
         end
       when IO, File, Zlib::GzipReader, Bgzf, StringIO
         begin
-          if options[:type] == :array
+          if options[:type] == :array or options[:type] == :line
             traverse_io_array(obj, options, &block)
           else
             traverse_io(obj, options, &block)

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.21.99
+  version: 5.21.100
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-10-20 00:00:00.000000000 Z
+date: 2017-10-23 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake